RUNDC3A ORF clone FHC12124

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone FHC12124

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Clone info.

Species

human

Clone Name

pFN21AE3968 Sequence (with vector) Restriction Map

Product ID

FHC12124

ORF Sequence

DNA sequence (1215 bp)
Protein sequence (405 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE3968

Symbol

RUNDC3A

Alias : RAP2IP, RPIP-8, RPIP8

Description

RUN domain containing 3A, transcript variant 2

Original Clone ID

cp93968

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1215 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 405 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS45699.1 1.8e-132 100.0 RUNDC3A CCDS45698.1 1e-130 100.0 RUNDC3A CCDS59294.1 1.9e-129 98.8 RUNDC3A CCDS47635.1 4.2e-63 54.7 RUNDC3B CCDS47636.1 1.2e-56 59.6 RUNDC3B The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR004012 60 187 PF02759 RUN HMMSmart IPR004012 125 187 SM00593 RUN ProfileScan IPR004012 52 189 PS50826 RUN
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_006686 405 605448 100.0 100.0 NP_001138297 446 605448 100.0 98.8 XP_016879527 434 605448 99.3 99.5 XP_016879528 433 605448 100.0 98.5 XP_016879524 474 605448 100.0 98.5 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE3968 Download

>KIEE3968  1215 bp
ATGGAAGCGAGCTTTGTCCAGACCACCATGGCTCTGGGGCTGTCCTCCAAGAAAGCGTCC
TCTCGCAACGTGGCTGTGGAGCGTAAGAACCTGATCACCGTGTGCAGGTTCTCTGTGAAA
ACGCTGCTGGAGAAGTACACAGCGGAGCCCATCGATGACTCATCGGAGGAGTTTGTCAAT
TTTGCAGCCATTTTAGAGCAGATCCTCAGCCACCGCTTCAAAGCCTGTGCCCCAGCAGGT
CCAGTGAGCTGGTTCAGCTCAGACGGGCAGCGGGGCTTTTGGGACTATATCCGGCTGGCC
TGCAGCAAAGTGCCCAACAACTGTGTGAGCAGCATCGAGAACATGGAGAACATCAGCACA
GCCCGGGCCAAGGGCCGGGCATGGATCCGGGTGGCACTGATGGAGAAGCGCATGTCAGAA
TACATCACCACGGCTCTGCGTGACACCCGGACCACCAGACGGTTCTATGACTCTGGAGCC
ATCATGCTGCGGGATGAAGCCACCATCCTCACCGGAATGCTGATCGGACTGAGCGCCATC
GACTTCAGCTTCTGTCTAAAGGGGGAAGTCCTGGACGGGAAGACCCCCGTGGTCATCGAT
TACACGCCCTACCTAAAGTTCACGCAGAGCTACGACTACCTGACGGACGAGGAGGAGCGG
CACAGCGCCGAGAGCAGCACGAGCGAGGACAACTCGCCCGAGCACCCGTACCTCCCGCTC
GTCACCGACGAGGACAGCTGGTACAGCAAGTGGCACAAGATGGAGCAGAAGTTCCGCATC
GTCTACGCGCAGAAGGGCTACCTGGAGGAGCTGGTGCGTCTGCGCGAGTCGCAGCTGAAG
GACCTGGAGGCGGAGAACCGGCGGCTTCAGCTGCAGCTGGAGGAGGCGGCGGCGCAGAAC
CAGCGCGAGAAACGGGAGCTGGAAGGCGTGATCCTGGAGCTGCAGGAGCAGCTGACAGGT
CTGATCCCCAGTGACCACGCCCCTCTGGCCCAGGGTTCCAAGGAGCTCACTACACCCCTG
GTCAATCAATGGCCCTCACTGGGAACGCTTAATGGGGCCGAGGGCGCCAGCAACTCCAAG
CTCTACCGGAGACACAGCTTCATGAGCACGGAGCCGCTGTCAGCTGAAGCCAGTCTGAGC
TCGGACTCCCAGCGCCTGGGAGAGGGCACGCGGGACGAGGAGCCCTGGGGTCCCATCGGA
AGCTCAGAGCCAAAT

ORF Protein

Cloned ORF protein sequence for pFN21AE3968 Download

>KIEE3968  405 aa
MEASFVQTTMALGLSSKKASSRNVAVERKNLITVCRFSVKTLLEKYTAEPIDDSSEEFVN
FAAILEQILSHRFKACAPAGPVSWFSSDGQRGFWDYIRLACSKVPNNCVSSIENMENIST
ARAKGRAWIRVALMEKRMSEYITTALRDTRTTRRFYDSGAIMLRDEATILTGMLIGLSAI
DFSFCLKGEVLDGKTPVVIDYTPYLKFTQSYDYLTDEEERHSAESSTSEDNSPEHPYLPL
VTDEDSWYSKWHKMEQKFRIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQLEEAAAQN
QREKRELEGVILELQEQLTGLIPSDHAPLAQGSKELTTPLVNQWPSLGTLNGAEGASNSK
LYRRHSFMSTEPLSAEASLSSDSQRLGEGTRDEEPWGPIGSSEPN

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE3968 Download

>pFN21AE3968  5920 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGAAGCGAGCTTTGTCCAGACCACCATGGCTCT
GGGGCTGTCCTCCAAGAAAGCGTCCTCTCGCAACGTGGCTGTGGAGCGTAAGAACCTGAT
CACCGTGTGCAGGTTCTCTGTGAAAACGCTGCTGGAGAAGTACACAGCGGAGCCCATCGA
TGACTCATCGGAGGAGTTTGTCAATTTTGCAGCCATTTTAGAGCAGATCCTCAGCCACCG
CTTCAAAGCCTGTGCCCCAGCAGGTCCAGTGAGCTGGTTCAGCTCAGACGGGCAGCGGGG
CTTTTGGGACTATATCCGGCTGGCCTGCAGCAAAGTGCCCAACAACTGTGTGAGCAGCAT
CGAGAACATGGAGAACATCAGCACAGCCCGGGCCAAGGGCCGGGCATGGATCCGGGTGGC
ACTGATGGAGAAGCGCATGTCAGAATACATCACCACGGCTCTGCGTGACACCCGGACCAC
CAGACGGTTCTATGACTCTGGAGCCATCATGCTGCGGGATGAAGCCACCATCCTCACCGG
AATGCTGATCGGACTGAGCGCCATCGACTTCAGCTTCTGTCTAAAGGGGGAAGTCCTGGA
CGGGAAGACCCCCGTGGTCATCGATTACACGCCCTACCTAAAGTTCACGCAGAGCTACGA
CTACCTGACGGACGAGGAGGAGCGGCACAGCGCCGAGAGCAGCACGAGCGAGGACAACTC
GCCCGAGCACCCGTACCTCCCGCTCGTCACCGACGAGGACAGCTGGTACAGCAAGTGGCA
CAAGATGGAGCAGAAGTTCCGCATCGTCTACGCGCAGAAGGGCTACCTGGAGGAGCTGGT
GCGTCTGCGCGAGTCGCAGCTGAAGGACCTGGAGGCGGAGAACCGGCGGCTTCAGCTGCA
GCTGGAGGAGGCGGCGGCGCAGAACCAGCGCGAGAAACGGGAGCTGGAAGGCGTGATCCT
GGAGCTGCAGGAGCAGCTGACAGGTCTGATCCCCAGTGACCACGCCCCTCTGGCCCAGGG
TTCCAAGGAGCTCACTACACCCCTGGTCAATCAATGGCCCTCACTGGGAACGCTTAATGG
GGCCGAGGGCGCCAGCAACTCCAAGCTCTACCGGAGACACAGCTTCATGAGCACGGAGCC
GCTGTCAGCTGAAGCCAGTCTGAGCTCGGACTCCCAGCGCCTGGGAGAGGGCACGCGGGA
CGAGGAGCCCTGGGGTCCCATCGGAAGCTCAGAGCCAAATGTTTAAACGAATTCGGGCTC
GGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACA
AAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCC
TTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACA
ACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTT
GTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTT
CAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGT
AAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAG
TAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTT
TCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTT
TTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAA
TAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTT
TTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGAT
GCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAG
ATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTG
CTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATA
CACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGAT
GGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCC
AACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATG
GGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAAC
GACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACT
GGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAA
GTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCT
GGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCC
TCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGA
CAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAA
GCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAG
GGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAA
AGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATC
GACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCC
CTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCG
CCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTT
CGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACC
GCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGC
CACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAG
AGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCG
CTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAA
CCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAG
GATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACT
CACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTAT
AGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAA
AAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAG
GTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTG
CCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATT
AAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGT
ACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT