FHC02416

Gene/Protein Characteristic Table for FHC02416

Species

human

Clone Name

pFN21AB7388 Sequence (with vector) Restriction Map

Product ID

FHC02416

Corresponding
Flexi Clone PID

FXC02416

ORF Sequence

DNA sequence (1080 bp)
Protein sequence (360 aa)

Linker Type

Flexi type

The extra Val codon is attached to the 3'-end of the ORF, because a Pme I site ...

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB463952]

Gene

KIBB7388

Symbol

OR1L1

Alias : HG23, OR1L2, OR9-27, OR9-C

Description

olfactory receptor, family 1, subfamily L, member 1

Original Clone ID

oc00602

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1080 bp
Restriction map A Restriction map B

Features of the protein sequence

Description

Length: 360 aa
Result of homology search against nr database ( FASTA output, Multiple alignment) Entry Exp ID% Protein Source Q8NH94 1.9e-157 100.0 Olfactory recep... Homo sapiens DAA04628 8e-157 99.4 TPA_inf: olfact... Homo sapiens XP_004048616 8.7e-152 97.8 olfactory recep... Gorilla gorilla... NP_001005236 2.2e-133 100.0 olfactory recep... Homo sapiens BAC05743 9.2e-133 99.4 seven transmemb... Homo sapiens The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR000276 76 100 PR00237 Rhodopsin-like GPCR superfamily IPR000276 109 130 PR00237 Rhodopsin-like GPCR superfamily IPR000725 142 153 PR00245 Olfactory receptor IPR000276 154 176 PR00237 Rhodopsin-like GPCR superfamily IPR000725 179 191 PR00245 Olfactory receptor IPR000725 226 242 PR00245 Olfactory receptor IPR000276 249 272 PR00237 Rhodopsin-like GPCR superfamily IPR000725 286 295 PR00245 Olfactory receptor IPR000276 321 347 PR00237 Rhodopsin-like GPCR superfamily IPR000725 332 343 PR00245 Olfactory receptor HMMPfam IPR000276 91 339 PF00001 Rhodopsin-like GPCR superfamily ProfileScan IPR000276 91 339 PS50262 Rhodopsin-like GPCR superfamily ScanRegExp IPR000276 160 176 PS00237 Rhodopsin-like GPCR superfamily
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 78 FAVFLPIYLITVIGNLLIILAIR 100 PRIMARY 23 2 110 YFFLSILSFVDICYVTVIIPKML 132 PRIMARY 23 3 181 HYITIMSHRCCVLLLVLSFCIPH 203 SECONDARY 23 4 253 GLAVIMTPFSCIIISYLRILITV 275 PRIMARY 23 5 287 AFSTCGSHLTVVTLFYGSISYLY 309 SECONDARY 23
Result of homology search against disease genes in OMIM database

(FASTA output, Multiple alignment)

H_id	H_len (aa)	OMIM_No.	ID (%)	Q_ali/Q_len (%)
NP_036492	312	603232	80.1	85.3
NP_002539	312	164342	81.6	85.0
NP_006628	314	608496	77.0	83.3
NP_001005191	312	611538	79.4	85.0
NP_003688	314	608492	76.7	85.6