HIF3A ORF clone FXC03642

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Flexi ORF Clone FXC03642

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Clone info.

Species

human

Clone Name

pF1KB6219 Sequence (with vector) Restriction Map

Product ID

FXC03642

HaloTag Clone PID

FHC03642

ORF Sequence

DNA sequence (2007 bp)
Protein sequence (669 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB527715]

Gene

KIBB6219

Symbol

HIF3A

Alias : HIF-3A, HIF3-alpha-1, IPAS, MOP7, PASD7, bHLHe17

Description

hypoxia inducible factor 3, alpha subunit, transcript variant 3

Original Clone ID

cs00819

Features of the cloned ORF sequence

Description

Length: 2007 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 669 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS12681.2 7.5e-193 100.0 HIF3A CCDS12682.1 8.1e-191 99.7 HIF3A CCDS42580.2 7.6e-159 100.0 HIF3A CCDS58324.1 1e-53 40.1 HIF1A CCDS9754.1 1.5e-53 40.0 HIF1A The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR013767 92 146 PF00989 PAS fold IPR013655 252 337 PF08447 PAS fold-3 IPR021537 478 509 PF11413 Hypoxia-inducible factor HMMSmart IPR001092 20 75 SM00353 Helix-loop-helix DNA-binding domain IPR000014 84 150 SM00091 PAS IPR000014 227 295 SM00091 PAS IPR001610 301 344 SM00086 PAC motif HMMTigr IPR000014 248 324 TIGR00229 PAS ProfileScan IPR000014 90 154 PS50112 PAS IPR000014 246 297 PS50112 PAS
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_690008 669 609976 100.0 100.0 NP_690007 667 609976 99.7 99.3 XP_005259209 713 609976 100.0 98.7 XP_016882627 663 609976 97.3 98.4 XP_016882625 707 609976 97.2 97.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB6219 Download

>KIBB6219  2007 bp
ATGGCGCTGGGGCTGCAGCGCGCAAGGTCGACCACGGAGCTGCGCAAGGAAAAGTCCCGG
GATGCGGCCCGCAGCCGGCGCAGCCAGGAGACCGAGGTGCTGTACCAGCTGGCTCACACG
CTGCCCTTCGCCCGCGGCGTCAGCGCCCACCTGGACAAGGCCTCTATCATGCGCCTCACC
ATCAGCTACCTGCGCATGCACCGCCTCTGCGCCGCAGGGGAGTGGAACCAGGTGGGAGCA
GGGGGAGAACCACTGGATGCCTGCTACCTGAAGGCCCTGGAGGGCTTCGTCATGGTGCTC
ACCGCCGAGGGAGACATGGCTTACCTGTCGGAGAATGTCAGCAAACACCTGGGCCTCAGT
CAGCTGGAGCTCATTGGACACAGCATCTTTGATTTCATCCACCCCTGTGACCAAGAGGAG
CTTCAGGACGCCCTGACCCCCCAGCAGACCCTGTCCAGGAGGAAGGTGGAGGCCCCCACG
GAGCGGTGCTTCTCCTTGCGCATGAAGAGTACGCTCACCAGCCGCGGGCGCACCCTCAAC
CTCAAGGCGGCCACCTGGAAGGTGCTGAACTGCTCTGGACATATGAGGGCCTACAAGCCA
CCTGCGCAGACTTCTCCAGCTGGGAGCCCTGACTCAGAGCCCCCGCTGCAGTGCCTGGTG
CTCATCTGCGAAGCCATCCCCCACCCAGGCAGCCTGGAGCCCCCACTGGGCCGAGGGGCC
TTCCTCAGCCGCCACAGCCTGGACATGAAGTTCACCTACTGTGACGACAGGATTGCAGAA
GTGGCTGGCTATAGTCCCGATGACCTGATCGGCTGTTCCGCCTACGAGTACATCCACGCG
CTGGACTCCGACGCGGTCAGCAAGAGCATCCACACCTTGCTGAGCAAGGGCCAGGCAGTA
ACAGGGCAGTATCGCTTCCTGGCCCGGAGTGGTGGCTACCTGTGGACCCAGACCCAGGCC
ACAGTGGTGTCAGGGGGACGGGGCCCCCAGTCGGAGAGTATCGTCTGTGTCCATTTTTTA
ATCAGCCAGGTGGAAGAGACCGGAGTGGTGCTGTCCCTGGAGCAAACGGAGCAACACTCT
CGCAGACCCATTCAGCGGGGCGCCCCCTCTCAGAAGGACACCCCTAACCCTGGGGACAGC
CTTGACACCCCTGGCCCCCGGATCCTTGCCTTCCTGCACCCGCCTTCCCTGAGCGAGGCT
GCCCTGGCCGCTGACCCCCGCCGTTTCTGCAGCCCTGACCTCCGTCGCCTCCTGGGACCC
ATCCTGGATGGGGCTTCAGTAGCAGCCACTCCCAGCACCCCGCTGGCCACACGGCACCCC
CAAAGTCCTCTTTCGGCTGATCTCCCAGATGAACTACCTGTGGGCACCGAGAATGTGCAC
AGACTCTTCACCTCCGGGAAAGACACTGAGGCAGTGGAGACAGATTTAGATATAGCTCAG
GATGCTGATGCTCTGGATTTGGAGATGCTGGCCCCCTACATCTCCATGGATGATGACTTC
CAGCTCAACGCCAGCGAGCAGCTACCCAGGGCCTACCACAGACCTCTGGGGGCTGTCCCC
CGGCCCCGTGCTCGGAGCTTCCATGGCCTGTCACCTCCAGCCCTTGAGCCCTCCCTGCTA
CCCCGCTGGGGGAGTGACCCCCGGCTGAGCTGCTCCAGCCCTTCCAGAGGGGACCCCTCA
GCATCCTCTCCCATGGCTGGGGCTCGGAAGAGGACCCTGGCCCAGAGCTCAGAGGACGAG
GACGAGGGAGTGGAGCTGCTGGGAGTGAGACCTCCCAAAAGGTCCCCCAGCCCAGAACAC
GAAAACTTTCTGCTCTTTCCTCTCAGCCTGAGTTTCCTTCTGACAGGAGGACCAGCCCCA
GGGAGCCTGCAGGACCCCAGCACCCCACTCCTGAACCTGAATGAGCCCCTGGGCCTGGGC
CCCTCACTGCTCTCTCCGTACTCAGACGAGGACACTACCCAGCCCGGGGGCCCCTTCCAG
CCAAGGGCAGGCTCAGCCCAGGCTGAC

ORF Protein

Cloned ORF protein sequence for pF1KB6219 Download

>KIBB6219  669 aa
MALGLQRARSTTELRKEKSRDAARSRRSQETEVLYQLAHTLPFARGVSAHLDKASIMRLT
ISYLRMHRLCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKHLGLS
QLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEAPTERCFSLRMKSTLTSRGRTLN
LKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQCLVLICEAIPHPGSLEPPLGRGA
FLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSKGQAV
TGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLSLEQTEQHS
RRPIQRGAPSQKDTPNPGDSLDTPGPRILAFLHPPSLSEAALAADPRRFCSPDLRRLLGP
ILDGASVAATPSTPLATRHPQSPLSADLPDELPVGTENVHRLFTSGKDTEAVETDLDIAQ
DADALDLEMLAPYISMDDDFQLNASEQLPRAYHRPLGAVPRPRARSFHGLSPPALEPSLL
PRWGSDPRLSCSSPSRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSPSPEH
ENFLLFPLSLSFLLTGGPAPGSLQDPSTPLLNLNEPLGLGPSLLSPYSDEDTTQPGGPFQ
PRAGSAQAD

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB6219 Download

>pF1KB6219  5120 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCGCTGGGG
CTGCAGCGCGCAAGGTCGACCACGGAGCTGCGCAAGGAAAAGTCCCGGGATGCGGCCCGC
AGCCGGCGCAGCCAGGAGACCGAGGTGCTGTACCAGCTGGCTCACACGCTGCCCTTCGCC
CGCGGCGTCAGCGCCCACCTGGACAAGGCCTCTATCATGCGCCTCACCATCAGCTACCTG
CGCATGCACCGCCTCTGCGCCGCAGGGGAGTGGAACCAGGTGGGAGCAGGGGGAGAACCA
CTGGATGCCTGCTACCTGAAGGCCCTGGAGGGCTTCGTCATGGTGCTCACCGCCGAGGGA
GACATGGCTTACCTGTCGGAGAATGTCAGCAAACACCTGGGCCTCAGTCAGCTGGAGCTC
ATTGGACACAGCATCTTTGATTTCATCCACCCCTGTGACCAAGAGGAGCTTCAGGACGCC
CTGACCCCCCAGCAGACCCTGTCCAGGAGGAAGGTGGAGGCCCCCACGGAGCGGTGCTTC
TCCTTGCGCATGAAGAGTACGCTCACCAGCCGCGGGCGCACCCTCAACCTCAAGGCGGCC
ACCTGGAAGGTGCTGAACTGCTCTGGACATATGAGGGCCTACAAGCCACCTGCGCAGACT
TCTCCAGCTGGGAGCCCTGACTCAGAGCCCCCGCTGCAGTGCCTGGTGCTCATCTGCGAA
GCCATCCCCCACCCAGGCAGCCTGGAGCCCCCACTGGGCCGAGGGGCCTTCCTCAGCCGC
CACAGCCTGGACATGAAGTTCACCTACTGTGACGACAGGATTGCAGAAGTGGCTGGCTAT
AGTCCCGATGACCTGATCGGCTGTTCCGCCTACGAGTACATCCACGCGCTGGACTCCGAC
GCGGTCAGCAAGAGCATCCACACCTTGCTGAGCAAGGGCCAGGCAGTAACAGGGCAGTAT
CGCTTCCTGGCCCGGAGTGGTGGCTACCTGTGGACCCAGACCCAGGCCACAGTGGTGTCA
GGGGGACGGGGCCCCCAGTCGGAGAGTATCGTCTGTGTCCATTTTTTAATCAGCCAGGTG
GAAGAGACCGGAGTGGTGCTGTCCCTGGAGCAAACGGAGCAACACTCTCGCAGACCCATT
CAGCGGGGCGCCCCCTCTCAGAAGGACACCCCTAACCCTGGGGACAGCCTTGACACCCCT
GGCCCCCGGATCCTTGCCTTCCTGCACCCGCCTTCCCTGAGCGAGGCTGCCCTGGCCGCT
GACCCCCGCCGTTTCTGCAGCCCTGACCTCCGTCGCCTCCTGGGACCCATCCTGGATGGG
GCTTCAGTAGCAGCCACTCCCAGCACCCCGCTGGCCACACGGCACCCCCAAAGTCCTCTT
TCGGCTGATCTCCCAGATGAACTACCTGTGGGCACCGAGAATGTGCACAGACTCTTCACC
TCCGGGAAAGACACTGAGGCAGTGGAGACAGATTTAGATATAGCTCAGGATGCTGATGCT
CTGGATTTGGAGATGCTGGCCCCCTACATCTCCATGGATGATGACTTCCAGCTCAACGCC
AGCGAGCAGCTACCCAGGGCCTACCACAGACCTCTGGGGGCTGTCCCCCGGCCCCGTGCT
CGGAGCTTCCATGGCCTGTCACCTCCAGCCCTTGAGCCCTCCCTGCTACCCCGCTGGGGG
AGTGACCCCCGGCTGAGCTGCTCCAGCCCTTCCAGAGGGGACCCCTCAGCATCCTCTCCC
ATGGCTGGGGCTCGGAAGAGGACCCTGGCCCAGAGCTCAGAGGACGAGGACGAGGGAGTG
GAGCTGCTGGGAGTGAGACCTCCCAAAAGGTCCCCCAGCCCAGAACACGAAAACTTTCTG
CTCTTTCCTCTCAGCCTGAGTTTCCTTCTGACAGGAGGACCAGCCCCAGGGAGCCTGCAG
GACCCCAGCACCCCACTCCTGAACCTGAATGAGCCCCTGGGCCTGGGCCCCTCACTGCTC
TCTCCGTACTCAGACGAGGACACTACCCAGCCCGGGGGCCCCTTCCAGCCAAGGGCAGGC
TCAGCCCAGGCTGACGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCG
ACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGC
TGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAG
GGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCA
GTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTT
TTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGG
ACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCA
GCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGC
AAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCT
GATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGT
TCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGC
TGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAG
ACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTG
GCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGAC
TGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCC
GAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACC
TGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCC
GGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTG
TTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGAT
GCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGC
CGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAA
GAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGAT
TCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGT
TCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACG
GTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAA
GGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGA
CGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAG
ATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCT
TACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACG
CTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACC
CCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGT
AAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTA
TGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGAC
AGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTC
TTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGAT
TACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGC
TCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTT
CACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGG
GATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGT
ACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTT
TTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTT
TAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCA
TCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTT
CAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGG
CGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAG
CGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAA
AACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACG
CTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCG
GAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCA
TCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACAT
TCAAATATGTATCCGCTCAT