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SpecieshumanProduct IDFXC00256Cloning SiteSgfI-PmeISymbolPCDHB16
Alias : ME1, PCDH-BETA16, PCDH3X, PCDHB8aDescriptionprotocadherin beta 16
Length: 2328 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 776 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS4251.1 0 99.0 PCDHB16 CCDS4250.1 0 79.3 PCDHB8 CCDS4256.1 0 77.1 PCDHB14 CCDS4245.1 0 77.3 PCDHB3 CCDS4255.1 0 79.0 PCDHB13
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR002126 73 92 PR00205 Cadherin IPR002126 242 271 PR00205 Cadherin IPR002126 314 326 PR00205 Cadherin IPR002126 326 345 PR00205 Cadherin IPR002126 449 462 PR00205 Cadherin IPR002126 509 535 PR00205 Cadherin IPR002126 543 560 PR00205 Cadherin HMMPfam IPR013164 32 112 PF08266 Cadherin IPR002126 141 232 PF00028 Cadherin IPR002126 247 337 PF00028 Cadherin IPR002126 356 441 PF00028 Cadherin IPR002126 456 552 PF00028 Cadherin IPR002126 580 661 PF00028 Cadherin HMMSmart IPR002126 155 240 SM00112 Cadherin IPR002126 264 345 SM00112 Cadherin IPR002126 368 449 SM00112 Cadherin IPR002126 473 559 SM00112 Cadherin IPR002126 589 670 SM00112 Cadherin ProfileScan IPR002126 34 133 PS50268 Cadherin IPR002126 134 242 PS50268 Cadherin IPR002126 243 347 PS50268 Cadherin IPR002126 348 451 PS50268 Cadherin IPR002126 452 561 PS50268 Cadherin IPR002126 576 674 PS50268 Cadherin
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 12 RQVLVFFVLLSLSGAGAELGSYS 34 SECONDARY 23 2 689 YLVVALASVSSLFLFSVLLFVVV 711 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_066008 776 606345 99.0 100.0 NP_061993 801 606334 79.3 98.5 NP_061760 796 606329 77.4 99.7 NP_061757 798 606340 77.1 99.7 NP_061756 798 606339 79.0 98.8 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KA1621 Download>KIAA1621 2328 bp ATGGAGATTGGATGGATGCACAATCGGAGACAAAGGCAAGTCCTTGTTTTCTTTGTTTTG CTGAGCTTGTCTGGGGCGGGCGCCGAGTTGGGGTCCTATTCCGTAGTGGAAGAAACGGAG AGAGGCTCTTTTGTGGCAAATCTAGGAAAAGACCTGGGGTTGGGGTTGACAGAGATGTCC ACCCGCAAGGCCAGGATCATTTCCCAGGGGAACAAACAGCATTTGCAGCTCAAGGCTCAA ACTGGGGATTTGCTCATAAATGAGAAGCTAGATCGAGAGGAGCTATGCGGTCCCACTGAG CCTTGCATACTACATTTCCAAGTGTTAATGGAAAACCCTTTAGAAATATTTCAGGCTGAA CTGAGGGTGATAGATATAAATGACCATTCTCCCATGTTCACTGAAAAGGAAATGATTCTA AAAATACCGGAAAACAGTCCTCTAGGAACTGAGTTCCCTCTGAATCATGCTTTGGACTTG GACGTAGGAAGCAATAATGTTCAAAACTATAAAATCAGCCCAAGCTCTCATTTCCGGGTT CTAATCCATGAATTCAGAGATGGCAGGAAATACCCTGAGCTAGTGTTGGATAAAGAGCTG GATCGGGAGGAGGAGCCTCAACTAAGATTAACCCTGACAGCGCTGGATGGTGGCTCTCCA CCGCGATCTGGAACTGCTCAGGTCCGTATTGAAGTGGTGGACATCAATGATAACGCTCCT GAGTTTGAGCAGCCCATCTACAAAGTGCAGATTCCAGAGAACAGTCCTCTTGGCTCCCTG GTTGCCACCGTCTCCGCCAGGGATTTAGACGGCGGAGCCAATGGAAAAATATCATACACA CTCTTTCAGCCTTCGGAGGATATTAGTAAAACTTTGGAGGTAAATCCTATGACAGGGGAA GTTCGACTGAGAAAGCAAGTAGATTTCGAAATGGTTACGTCTTATGAAGTGCGCATCAAA GCCACAGATGGGGGAGGTCTTTCAGGAAAGTGCACTCTTCTCCTGCAGGTGGTGGACGTG AATGACAATCCCCCACAGGTGACCATGTCTGCACTCACCAGCCCCATCCCAGAGAACTCG CCTGAGATAGTAGTTGCTGTTTTCAGCGTTTCAGATCCTGACTCCGGAAACAATGGGAAG ACGATTTCCTCCATCCAGGAAGACCTTCCCTTTCTTCTAAAACCTTCAGTCAAGAACTTT TACACCTTGGTAACGGAGAGAGCACTCGACAGAGAAGCAAGAGCTGAATATAATATCACC CTCACCGTCACAGATATGGGGACTCCAAGGCTGAAAACGGAGCACAACATAACAGTGCAG ATATCAGATGTCAATGATAACGCCCCCACTTTCACCCAAACCTCCTACACCCTGTTCGTC CGCGAGAACAACAGCCCCGCCCTGCACATCGGCAGCGTCAGCGCCACAGACAGAGACTCA GGCATCAACGCCCAGGTCACCTACTCGCTGCTGCCGCCCCAGGACCCGCACCTGCCCCTC GCCTCCCTGGTCTCCATCAACGCAGACAACGGCCACCTGTTCGCCCTCAGGTCGCTGGAC TACGAGGCCCTGCGGGAGTTCGAGTTCCGCGTGAGCGCCACAGACCGCGGCTCCCCGGCT TTGAGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTC GTGCTGTACCCGCTGCAGAACGGCTCCGCGCCCTGCACTGAGCTGGTGCCCCGGGCGGCC GAGCCGGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCC TGGCTGTCGTACCAGCTGCTCAAGGCCACGGAGCCCGGGCTGTTCGGTGTGTGGGCGCAC AATGGCGAGGTGCGCACCGCCAGGCTGCTGAGCGAGCGCGACGCAGCCAAGCACAGGCTG GTGGTGCTGGTCAAGGACAATGGCGAGCCTCCGTGCTCGGCCACCGCCACGCTGCACGTG CTCCTGGTGGACGGCTTCTCCCAGCCCTTCCTGCCGCTCCCAGAGGCGGCCCCCGGCCAG ACCCAGGCCAACTCGCTCACTGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCGTCGCTC TTCCTCTTTTCGGTGCTCCTGTTCGTGGTGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCC TCGGTGGGCCGCTGCTCGATGCCTGAGGGCCCCTTTCCAGGGCGTCTGGTGGACGTAAGC GGCACCGGGACCCTGTCCCAGAGCTACCAATACGAGGTGTGTCTGACAGGAGGCTCAGAA ACAAGTGAGTTCAAGTTCCTGAAGCCGATTATCCCCAACTTCTCTCCT
Cloned ORF protein sequence for pF1KA1621 Download>KIAA1621 776 aa MEIGWMHNRRQRQVLVFFVLLSLSGAGAELGSYSVVEETERGSFVANLGKDLGLGLTEMS TRKARIISQGNKQHLQLKAQTGDLLINEKLDREELCGPTEPCILHFQVLMENPLEIFQAE LRVIDINDHSPMFTEKEMILKIPENSPLGTEFPLNHALDLDVGSNNVQNYKISPSSHFRV LIHEFRDGRKYPELVLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVRIEVVDINDNAP EFEQPIYKVQIPENSPLGSLVATVSARDLDGGANGKISYTLFQPSEDISKTLEVNPMTGE VRLRKQVDFEMVTSYEVRIKATDGGGLSGKCTLLLQVVDVNDNPPQVTMSALTSPIPENS PEIVVAVFSVSDPDSGNNGKTISSIQEDLPFLLKPSVKNFYTLVTERALDREARAEYNIT LTVTDMGTPRLKTEHNITVQISDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDS GINAQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALREFEFRVSATDRGSPA LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPCSATATLHV LLVDGFSQPFLPLPEAAPGQTQANSLTVYLVVALASVSSLFLFSVLLFVVVRLCRRSRAA SVGRCSMPEGPFPGRLVDVSGTGTLSQSYQYEVCLTGGSETSEFKFLKPIIPNFSP
Nucleotide Sequence (with vector) for pF1KA1621 Download>pF1KA1621 5441 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGAGATTGGA TGGATGCACAATCGGAGACAAAGGCAAGTCCTTGTTTTCTTTGTTTTGCTGAGCTTGTCT GGGGCGGGCGCCGAGTTGGGGTCCTATTCCGTAGTGGAAGAAACGGAGAGAGGCTCTTTT GTGGCAAATCTAGGAAAAGACCTGGGGTTGGGGTTGACAGAGATGTCCACCCGCAAGGCC AGGATCATTTCCCAGGGGAACAAACAGCATTTGCAGCTCAAGGCTCAAACTGGGGATTTG CTCATAAATGAGAAGCTAGATCGAGAGGAGCTATGCGGTCCCACTGAGCCTTGCATACTA CATTTCCAAGTGTTAATGGAAAACCCTTTAGAAATATTTCAGGCTGAACTGAGGGTGATA GATATAAATGACCATTCTCCCATGTTCACTGAAAAGGAAATGATTCTAAAAATACCGGAA AACAGTCCTCTAGGAACTGAGTTCCCTCTGAATCATGCTTTGGACTTGGACGTAGGAAGC AATAATGTTCAAAACTATAAAATCAGCCCAAGCTCTCATTTCCGGGTTCTAATCCATGAA TTCAGAGATGGCAGGAAATACCCTGAGCTAGTGTTGGATAAAGAGCTGGATCGGGAGGAG GAGCCTCAACTAAGATTAACCCTGACAGCGCTGGATGGTGGCTCTCCACCGCGATCTGGA ACTGCTCAGGTCCGTATTGAAGTGGTGGACATCAATGATAACGCTCCTGAGTTTGAGCAG CCCATCTACAAAGTGCAGATTCCAGAGAACAGTCCTCTTGGCTCCCTGGTTGCCACCGTC TCCGCCAGGGATTTAGACGGCGGAGCCAATGGAAAAATATCATACACACTCTTTCAGCCT TCGGAGGATATTAGTAAAACTTTGGAGGTAAATCCTATGACAGGGGAAGTTCGACTGAGA AAGCAAGTAGATTTCGAAATGGTTACGTCTTATGAAGTGCGCATCAAAGCCACAGATGGG GGAGGTCTTTCAGGAAAGTGCACTCTTCTCCTGCAGGTGGTGGACGTGAATGACAATCCC CCACAGGTGACCATGTCTGCACTCACCAGCCCCATCCCAGAGAACTCGCCTGAGATAGTA GTTGCTGTTTTCAGCGTTTCAGATCCTGACTCCGGAAACAATGGGAAGACGATTTCCTCC ATCCAGGAAGACCTTCCCTTTCTTCTAAAACCTTCAGTCAAGAACTTTTACACCTTGGTA ACGGAGAGAGCACTCGACAGAGAAGCAAGAGCTGAATATAATATCACCCTCACCGTCACA GATATGGGGACTCCAAGGCTGAAAACGGAGCACAACATAACAGTGCAGATATCAGATGTC AATGATAACGCCCCCACTTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAGAACAAC AGCCCCGCCCTGCACATCGGCAGCGTCAGCGCCACAGACAGAGACTCAGGCATCAACGCC CAGGTCACCTACTCGCTGCTGCCGCCCCAGGACCCGCACCTGCCCCTCGCCTCCCTGGTC TCCATCAACGCAGACAACGGCCACCTGTTCGCCCTCAGGTCGCTGGACTACGAGGCCCTG CGGGAGTTCGAGTTCCGCGTGAGCGCCACAGACCGCGGCTCCCCGGCTTTGAGCAGCGAG GCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTCGTGCTGTACCCG CTGCAGAACGGCTCCGCGCCCTGCACTGAGCTGGTGCCCCGGGCGGCCGAGCCGGGCTAC CTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTAC CAGCTGCTCAAGGCCACGGAGCCCGGGCTGTTCGGTGTGTGGGCGCACAATGGCGAGGTG CGCACCGCCAGGCTGCTGAGCGAGCGCGACGCAGCCAAGCACAGGCTGGTGGTGCTGGTC AAGGACAATGGCGAGCCTCCGTGCTCGGCCACCGCCACGCTGCACGTGCTCCTGGTGGAC GGCTTCTCCCAGCCCTTCCTGCCGCTCCCAGAGGCGGCCCCCGGCCAGACCCAGGCCAAC TCGCTCACTGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCGTCGCTCTTCCTCTTTTCG GTGCTCCTGTTCGTGGTGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTCGGTGGGCCGC TGCTCGATGCCTGAGGGCCCCTTTCCAGGGCGTCTGGTGGACGTAAGCGGCACCGGGACC CTGTCCCAGAGCTACCAATACGAGGTGTGTCTGACAGGAGGCTCAGAAACAAGTGAGTTC AAGTTCCTGAAGCCGATTATCCCCAACTTCTCTCCTGTTTAAACGAATTCGAGCTCGGTA CCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGC CCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGG GGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCT TGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTG CTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCG GGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTT GCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCT GGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGA TGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAA CAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGAC TGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGG CGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAG GCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTT GTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTG TCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTG CATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGA GCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAG GGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGAT CTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTT TCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTG GCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTT TACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTC TTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGC TCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACAT GTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTT CCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCG AAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTC TCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGT GGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAA GCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTA TCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAA CAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAA CTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTT CGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTT TTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGAT CTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCAT GAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCA CGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTA AGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTA TCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCC GTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACT TACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGG CGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT GATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAA CTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGG GAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTA TCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGA ACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGC ATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTT TGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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