BLASTX alignment cluster 17    (75168..80273)

Local alignments in this cluster

gi|4115365[fasta] (AC005957) reverse transcriptase-like protein [Arabidopsis thaliana]
Length 1329 aa
position (link: detail on the area) subject position direction score
80330..79884 (104..252) - 256
79890..79819 (252..275) - 60
79710..79588 (282..322) - 91
78776..78579 (348..413) - 195
78236..77817 (414..553) - 511
77415..77209 (626..694) - 184
77190..76981 (694..763) - 257
76695..76471 (789..863) - 194
76389..76333 (929..947) - 60
76337..75975 (952..1072) - 401
75926..75168 (1076..1328) - 678
41981..42247 (474..562) + 65

gi|4206306[fasta] (AF049110) prpol [Zea mays]
Length 1317 aa
position (link: detail on the area) subject position direction score
78999..78841 (60..112) - 116
78999..78841 (60..112) - 116
78722..78552 (153..209) - 104
78722..78552 (153..209) - 104
78365..77820 (251..432) - 457
78365..77820 (251..432) - 457
77832..77728 (432..466) - 70
77832..77728 (432..466) - 70
77730..77254 (469..627) - 369
77730..77254 (469..627) - 369
77244..76960 (635..729) - 211
77244..76960 (635..729) - 211
76941..76525 (738..876) - 172
76941..76525 (738..876) - 172
76337..75972 (930..1051) - 254
76337..75972 (930..1051) - 254
75965..75678 (1055..1150) - 195
75965..75678 (1055..1150) - 195
75686..75519 (1149..1204) - 92
75686..75519 (1149..1204) - 92
75299..75168 (1273..1316) - 102
75299..75168 (1273..1316) - 102
75299..75168 (1273..1316) - 102
41981..42466 (354..515) + 35

gi|3695395[fasta] (AF096372) contains similarity to reverse transcriptase (Pfam: PF00078 rvt, E=4.3e-08) [Arabidopsis thaliana]
Length 637 aa
position (link: detail on the area) subject position direction score
80246..80013 (1..78) - 135
79164..78862 (130..230) - 190
78776..78552 (242..316) - 218
78239..77832 (322..457) - 478
77811..77734 (453..478) - 66
77727..77479 (484..566) - 262
77472..77248 (563..637) - 243
42236..42433 (453..518) + 88
41981..42205 (383..457) + 930

gi|4206309[fasta] (AF049112) prpol [Zea mays]
Length 479 aa
position (link: detail on the area) subject position direction score
77975..77820 (2..53) - 149
77975..77820 (2..53) - 149
77832..77728 (53..87) - 70
77832..77728 (53..87) - 70
77730..77254 (90..248) - 371
77730..77254 (90..248) - 371
77235..76960 (259..350) - 209
77235..76960 (259..350) - 209
76911..76579 (369..479) - 145
76911..76579 (369..479) - 145
76911..76579 (369..479) - 145
42065..42466 (3..136) + 156

gi|3377833[fasta] (AF075598) contains similarity to Nicotiana tabacum probable integrase (GB:X80830) [Arabidopsis thaliana]
Length 375 aa
position (link: detail on the area) subject position direction score
76734..76471 (3..90) - 103
76337..76266 (172..195) - 54
76148..75963 (195..256) - 236
75902..75744 (263..315) - 163

show all (61) hits

   gi|2864621|gnl|PID|e1250518
   gi|1085915|pir||S52564
   gi|3377834
   gi|130407|sp|P10394|POL4_DROME
   gi|2995405|gnl|PID|e312296
   gi|4235644
   gi|2522228|dbj||AB007466_2
   gi|2133676|pir||S70430
   gi|3510505
   gi|478289|pir||JN0791
   gi|1710054|sp|Q05654|RDPO_SCHPO
   gi|629693|pir||S47444
   gi|101042|pir||A36373
   gi|2842524|gnl|PID|e1250012
   gi|2791289|gnl|PID|e1237234
   gi|2133292|pir||S60179
   gi|1402848
   gi|3319351
   gi|1226168
   gi|102939|pir||B36329
   gi|3810595
   gi|422418|pir||S34639
   gi|130405|sp|P04323|POL3_DROME
   gi|130398|sp|P20825|POL2_DROME
   gi|557718
   gi|522302
   gi|280492|pir||S23570
   gi|4063760
   gi|1084606|pir||S53577
   gi|2133196|pir||S69842
   gi|1326016
   gi|173088
   gi|763265
   gi|1945323|gnl|PID|e243484
   gi|536873
   gi|84801|pir||S08405
   gi|3493214
   gi|4165194|gnl|PID|e1371477
   gi|538067
   gi|3688328|gnl|PID|e1329638
   gi|226407|prf||1510387A
   gi|1769898|gnl|PID|e283238
   gi|225731|prf||1312271A
   gi|401036|sp|P31843|RRPO_OENBE
   gi|99721|pir||S05465
   gi|1916937
   gi|4006831
   gi|3645899
   gi|3402755|gnl|PID|e1314599
   gi|2865202
   gi|479178|pir||S32437
   gi|391657|gnl|PID|d1002178
   gi|224534|prf||1107279B
   gi|74599|pir||OFFFCP
   gi|1169016|sp|P04146|COPI_DROME
   gi|950319

[help]


Entrance