information on T27D20    (42065..42466)

Direction: +

Frame: 2

ORF

    41927..42502  (Met: 42014 42086 42158 42224 42260 42269)
PIDKGYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSG
AIIFSKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLR
SFIGKFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLYANLKKCTFCSDKFFFPICV
YDFYVNILLIIN

GenBank annotation

    41442..42505    T27D20.2

BLASTX cluster

    40570..43464    cluster 7    45 hits for protein gene

BLASTN cluster

    None

GENSCAN

    40052..46670    gene model 9
    Suboptimal exon

        41996..42277    Intr    Phase: 0    Score: 0.208
        41996..42502    Term    Phase: 0    Score: 0.158

Grail

    42014..42285    exon    Phase: 0    Score: 62

Exon-Intron boundary candidatates

Acceptor
41934 [0.003] (1) 41950 [0.001] (2) 42126 [0.009] (1) 42152 [0.471] (0)
42168 [0.002] (1) 42344 [0.002] (0) 42372 [0.86N] (1)
Donor
41940 [0.029] (2) 42151 [0.009] (0) 42203 [0.027] (1) 42277 [0.918] (0)
42285 [0.923] (2) 42296 [0.92N/0.816] (1) 42401 [0.222] (1) 42444 [0.004] (2)
42463 [0.012] (0)

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