information on T27D20
(42236..42433)
Direction: +
Frame: 2
ORF
41927..42502 (Met: 42014 42086 42158 42224 42260 42269)
PIDKGYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSG
AIIFSKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLR
SFIGKFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLYANLKKCTFCSDKFFFPICV
YDFYVNILLIIN
GenBank annotation
41442..42505 T27D20.2
BLASTX cluster
40570..43464 cluster 7 45 hits for protein gene
BLASTN cluster
None
GENSCAN
40052..46670 gene model 9
Suboptimal exon
41996..42277 Intr Phase: 0 Score: 0.208
41996..42502 Term Phase: 0 Score: 0.158
Grail
42014..42285 exon Phase: 0 Score: 62
Exon-Intron boundary candidatates
Acceptor |
41934 [0.003] (1) |
41950 [0.001] (2) |
42126 [0.009] (1) |
42152 [0.471] (0) |
42168 [0.002] (1) |
42344 [0.002] (0) |
42372 [0.86N] (1) |
Donor |
41940 [0.029] (2) |
42151 [0.009] (0) |
42203 [0.027] (1) |
42277 [0.918] (0) |
42285 [0.923] (2) |
42296 [0.92N/0.816] (1) |
42401 [0.222] (1) |
42444 [0.004] (2) |
42463 [0.012] (0) |
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Entrance