BLASTX alignment cluster 13    (73155..76500)


Local alignments in this cluster

gi|1402881|emb|CAA66812|[fasta] (X98130) non-ltr retrotransposon reverse transcriptase-like protein [Arabidopsis thaliana]
Length 893 aa

position (link: detail on the area) subject position direction score

76500..76057 (4..151) - 1270
76038..75301 (155..400) - 785
75333..74170 (394..781) - 1395
74158..73847 (781..884) - 395


gi|3193294[fasta] (AF069298) similar to reverse transcriptases (Pfam: rvt.hmm, score: 53.76) [Arabidopsis thaliana]
Length 657 aa

position (link: detail on the area) subject position direction score

75147..74287 (2..288) - 602
74280..74155 (292..333) - 103
74158..73835 (333..440) - 313
73753..73526 (449..524) - 151
73418..73164 (564..648) - 250


gi|3892061|gb|AAC78274.1|AAC78274[fasta] (AC002330) putative reverse transcriptase [Arabidopsis thaliana]
Length 543 aa

position (link: detail on the area) subject position direction score

75147..74287 (2..288) - 457
74280..74155 (292..333) - 103
74158..73937 (333..406) - 199
73373..73185 (451..513) - 191


gi|3513745[fasta] (AF080118) contains similarity to reverse trancriptase (Pfam: rvt.hmm, score: 42.57) [Arabidopsis thaliana]
Length 1662 aa

position (link: detail on the area) subject position direction score

76110..76051 (507..526) - 105
76011..75703 (539..641) - 108
75498..75244 (704..788) - 134
75186..74764 (805..945) - 281
74742..74464 (955..1047) - 190
74436..74305 (1058..1101) - 70
74158..73667 (1153..1316) - 147
73352..73155 (1362..1427) - 115


gi|2708743[fasta] (AC003952) putative Tal-1-like reverse transcriptase [Arabidopsis thaliana]
Length 1365 aa

position (link: detail on the area) subject position direction score

76005..75679 (159..267) - 70
75468..75268 (331..397) - 115
75159..74779 (431..557) - 270
74739..74467 (573..663) - 197
74442..74305 (673..718) - 71
74158..73994 (770..824) - 71
73954..73652 (838..938) - 138
73352..73158 (1045..1109) - 105


show all (8) hits

   gi|4539357|emb|CAB40051.1|
   gi|3695376
   gi|4557078|gb|AAD22517.1|AC007045_17

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