information on T25K17    (74739..74467)

Direction: -

Frame: 1

ORF

    75054..73678  (Met: 74925 74787 74745 74517 74424 74406 74202 74076 73974 73923 73779 73686)
VTAAVREFFISGNLLKQWNATTIVLIPKFPNASCTSDFRPISCMNTLYKVIARLLTDRLQ
KLLSCVISPSQSAFLPGRLLAENVLLATEMVHGYNWRNISLRGMLKVDLRKAFDSVRWEF
IIAALLALGVPTKFINWIHQCISTPTFTVSVNGCCGGFFKSAKGLRQGDPLSPYLFVLAM
EVFSKLLNSRFDSGYIRYHPKASDLSISHLMFADDVMIFFDGGSSSLHGICETLEDFASW
SGLKVNNDKSHFFCAGLEQAERNSLAAYGFPQGCLPIRYLGLPLMCRKLRIAEYEPLLEK
SPKNSDHGQQIVYLTQVEFNLLLPLSMVSSTFGCPLSCCQRVALRRLKAFVLGSFERETL
MVVEEQRSLGLLFASQKMKVGLALEDSPSGTKRFVCVLFGFSLIIKVRFGFLGTLITILE
AGLFGMWLLPHQIHGLGVCSCSLDLWRSSLLNATWVMAA

GenBank annotation

    None

BLASTX cluster

    76485..68240    cluster 12    19 hits for protein gene
    76500..73155    cluster 13    8 hits for protein gene

BLASTN cluster

    None

GENSCAN

    76485..72876    gene model 17
    Suboptimal exon

        74574..73791    Intr    Phase: 0    Score: 0.244
        74837..73791    Intr    Phase: 1    Score: 0.166
        74945..73791    Intr    Phase: 1    Score: 0.194
        74837..74710    Intr    Phase: 1    Score: 0.157

Grail

    74684..73675    exon    Phase: 1    Score: 69
    74925..73675    exon    Phase: 0    Score: 36
    75821..75055    exon    Phase: 1    Score: 73
    76583..75055    exon    Phase: 1    Score: 76

Exon-Intron boundary candidatates

Acceptor
73708 [0.007] (2) 73724 [0.003] (1) 73758 [0.002] (0) 73790 [0.78N/0.216] (1)
73836 [0.137] (0) 73917 [0.002] (0) 73964 [0.015] (1) 73997 [0.026] (1)
74017 [0.002] (2) 74032 [0.003] (2) 74106 [0.448] (0) 74194 [0.040] (2)
74277 [0.87N/0.789] (0) 74282 [0.080] (1) 74322 [0.007] (0) 74383 [0.008] (2)
74474 [0.71N/0.146] (1) 74553 [0.003] (0) 74564 [0.018] (1) 74574 [0.009] (0)
74684 [0.321] (1) 74821 [0.041] (2) 74837 [0.017] (1) 74885 [0.011] (1)
74938 [0.005] (2) 74945 [0.054] (1) 75054 [0.007] (0)
Donor
73744 [0.029] (0) 73791 [0.019] (1) 73837 [0.053] (0) 73918 [0.057] (0)
73955 [0.024] (2) 73998 [0.004] (1) 74107 [0.172] (0) 74222 [0.072] (2)
74323 [0.74N/0.033] (0) 74370 [0.020] (1) 74475 [0.86N/0.023] (1) 74553 [0.005] (1)
74737 [0.468] (0) 74748 [0.94N/0.953] (1) 74785 [0.005] (0) 75021 [0.114] (1)
75043 [0.053] (0) 75055 [0.042] (0)

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