information on T25K17
(74739..74467)
Direction: -
Frame: 1
ORF
75054..73678 (Met: 74925 74787 74745 74517 74424 74406 74202 74076 73974 73923 73779 73686)
VTAAVREFFISGNLLKQWNATTIVLIPKFPNASCTSDFRPISCMNTLYKVIARLLTDRLQ
KLLSCVISPSQSAFLPGRLLAENVLLATEMVHGYNWRNISLRGMLKVDLRKAFDSVRWEF
IIAALLALGVPTKFINWIHQCISTPTFTVSVNGCCGGFFKSAKGLRQGDPLSPYLFVLAM
EVFSKLLNSRFDSGYIRYHPKASDLSISHLMFADDVMIFFDGGSSSLHGICETLEDFASW
SGLKVNNDKSHFFCAGLEQAERNSLAAYGFPQGCLPIRYLGLPLMCRKLRIAEYEPLLEK
SPKNSDHGQQIVYLTQVEFNLLLPLSMVSSTFGCPLSCCQRVALRRLKAFVLGSFERETL
MVVEEQRSLGLLFASQKMKVGLALEDSPSGTKRFVCVLFGFSLIIKVRFGFLGTLITILE
AGLFGMWLLPHQIHGLGVCSCSLDLWRSSLLNATWVMAA
GenBank annotation
None
BLASTX cluster
76485..68240 cluster 12 19 hits for protein gene
76500..73155 cluster 13 8 hits for protein gene
BLASTN cluster
None
GENSCAN
76485..72876 gene model 17
Suboptimal exon
74574..73791 Intr Phase: 0 Score: 0.244
74837..73791 Intr Phase: 1 Score: 0.166
74945..73791 Intr Phase: 1 Score: 0.194
74837..74710 Intr Phase: 1 Score: 0.157
Grail
74684..73675 exon Phase: 1 Score: 69
74925..73675 exon Phase: 0 Score: 36
75821..75055 exon Phase: 1 Score: 73
76583..75055 exon Phase: 1 Score: 76
Exon-Intron boundary candidatates
Acceptor |
73708 [0.007] (2) |
73724 [0.003] (1) |
73758 [0.002] (0) |
73790 [0.78N/0.216] (1) |
73836 [0.137] (0) |
73917 [0.002] (0) |
73964 [0.015] (1) |
73997 [0.026] (1) |
74017 [0.002] (2) |
74032 [0.003] (2) |
74106 [0.448] (0) |
74194 [0.040] (2) |
74277 [0.87N/0.789] (0) |
74282 [0.080] (1) |
74322 [0.007] (0) |
74383 [0.008] (2) |
74474 [0.71N/0.146] (1) |
74553 [0.003] (0) |
74564 [0.018] (1) |
74574 [0.009] (0) |
74684 [0.321] (1) |
74821 [0.041] (2) |
74837 [0.017] (1) |
74885 [0.011] (1) |
74938 [0.005] (2) |
74945 [0.054] (1) |
75054 [0.007] (0) |
Donor |
73744 [0.029] (0) |
73791 [0.019] (1) |
73837 [0.053] (0) |
73918 [0.057] (0) |
73955 [0.024] (2) |
73998 [0.004] (1) |
74107 [0.172] (0) |
74222 [0.072] (2) |
74323 [0.74N/0.033] (0) |
74370 [0.020] (1) |
74475 [0.86N/0.023] (1) |
74553 [0.005] (1) |
74737 [0.468] (0) |
74748 [0.94N/0.953] (1) |
74785 [0.005] (0) |
75021 [0.114] (1) |
75043 [0.053] (0) |
75055 [0.042] (0) |
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