information on T25K17    (76005..75679)

Direction: -

Frame: 1

ORF

    76593..75058  (Met: 76485 76242 75675 75390 75231 75174)
ESVVLVNLGARVSKIKVSSIKNGLRSLICVHKFFVGMSCGFNIPSHRNGFKKWFKVNRPI
FGGVIEKHVKQPKDKKFINALLPGWFFDENYGFSDLGKIWVLWDPSVEVVIVAKSLQMIT
CEVLFPNSRTWIVISVVYAANEDDKRKELWREITALVASPVTFNRPWILLGDFNQVLHPH
EHSRHVSLNVDRRIRDFRECLLDAELSDLVYKGSSFTWWNKSKTRPVAKKIDRILVNESW
SNLFPSSFGLFGPPDFSDHASCGVVLELDPIKAKRPFKFFNFLLKNPEFLNLVWDVWYST
NVVGSSMFRVSKKLKALKKPIKDFSRLNYSNLEKRTEEAHETLLSFQNLTLDNPSLENAA
HELEAQRKWQILATAEESFFRQRSRVTWFAEGDGNTRYFHRMADSRKSVNTITTLVDDSG
TQIDSQQGIADHCALYFENLLSDDNDPYSLEQDDMNLLLTYRCPYSQVADLEAMFSDEDI
KAAFFGLPSNKACGPDGFPVEFFKAAWSCIGA

GenBank annotation

    None

BLASTX cluster

    76485..68240    cluster 12    19 hits for protein gene
    76500..73155    cluster 13    8 hits for protein gene

BLASTN cluster

    None

GENSCAN

    76485..72876    gene model 17
    Suboptimal exon

        76485..75063    Init    Phase: 0    Score: 0.378
        76485..75129    Init    Phase: 0    Score: 0.256

Grail

    75821..75055    exon    Phase: 1    Score: 73
    76583..75055    exon    Phase: 1    Score: 76

Exon-Intron boundary candidatates

Acceptor
75077 [0.015] (1) 75081 [0.006] (0) 75150 [0.002] (0) 75158 [0.005] (1)
75192 [0.041] (0) 75208 [0.087] (2) 75335 [0.78N/0.087] (1) 75376 [0.020] (2)
75391 [0.036] (2) 75483 [0.008] (0) 75501 [0.001] (0) 75503 [0.003] (1)
75616 [0.004] (2) 75788 [0.002] (1) 75821 [0.104] (1) 75830 [0.002] (1)
75952 [0.69N/0.115] (2) 75956 [0.023] (1) 76018 [0.003] (2) 76042 [0.001] (2)
76068 [0.198] (0) 76082 [0.002] (1) 76099 [0.011] (2) 76121 [0.001] (1)
76242 [0.017] (0) 76304 [0.110] (1) 76310 [0.074] (1) 76397 [0.006] (1)
76406 [0.003] (1) 76420 [0.701] (2) 76428 [0.011] (0) 76459 [0.002] (2)
76583 [0.002] (1)
Donor
75063 [0.005] (1) 75193 [0.011] (0) 75297 [0.003] (1) 75405 [0.006] (1)
75495 [0.022] (1) 75761 [0.74N] (2) 75849 [0.019] (1) 75875 [0.008] (2)
76069 [0.92N/0.034] (0) 76114 [0.026] (0) 76126 [0.037] (0) 76228 [0.034] (0)
76270 [0.010] (0) 76340 [0.009] (2) 76344 [0.305] (1) 76429 [0.005] (0)
76520 [0.494] (2) 76546 [0.74N/0.186] (0) 76557 [0.011] (1) 76561 [0.85N/0.576] (0)

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