information on T25K17
(75420..75271)
Direction: -
Frame: 1
ORF
76593..75058 (Met: 76485 76242 75675 75390 75231 75174)
ESVVLVNLGARVSKIKVSSIKNGLRSLICVHKFFVGMSCGFNIPSHRNGFKKWFKVNRPI
FGGVIEKHVKQPKDKKFINALLPGWFFDENYGFSDLGKIWVLWDPSVEVVIVAKSLQMIT
CEVLFPNSRTWIVISVVYAANEDDKRKELWREITALVASPVTFNRPWILLGDFNQVLHPH
EHSRHVSLNVDRRIRDFRECLLDAELSDLVYKGSSFTWWNKSKTRPVAKKIDRILVNESW
SNLFPSSFGLFGPPDFSDHASCGVVLELDPIKAKRPFKFFNFLLKNPEFLNLVWDVWYST
NVVGSSMFRVSKKLKALKKPIKDFSRLNYSNLEKRTEEAHETLLSFQNLTLDNPSLENAA
HELEAQRKWQILATAEESFFRQRSRVTWFAEGDGNTRYFHRMADSRKSVNTITTLVDDSG
TQIDSQQGIADHCALYFENLLSDDNDPYSLEQDDMNLLLTYRCPYSQVADLEAMFSDEDI
KAAFFGLPSNKACGPDGFPVEFFKAAWSCIGA
GenBank annotation
None
BLASTX cluster
76485..68240 cluster 12 19 hits for protein gene
76500..73155 cluster 13 8 hits for protein gene
BLASTN cluster
None
GENSCAN
76485..72876 gene model 17
Suboptimal exon
76485..75063 Init Phase: 0 Score: 0.378
76485..75129 Init Phase: 0 Score: 0.256
Grail
75821..75055 exon Phase: 1 Score: 73
76583..75055 exon Phase: 1 Score: 76
Exon-Intron boundary candidatates
Acceptor |
75077 [0.015] (1) |
75081 [0.006] (0) |
75150 [0.002] (0) |
75158 [0.005] (1) |
75192 [0.041] (0) |
75208 [0.087] (2) |
75335 [0.78N/0.087] (1) |
75376 [0.020] (2) |
75391 [0.036] (2) |
75483 [0.008] (0) |
75501 [0.001] (0) |
75503 [0.003] (1) |
75616 [0.004] (2) |
75788 [0.002] (1) |
75821 [0.104] (1) |
75830 [0.002] (1) |
75952 [0.69N/0.115] (2) |
75956 [0.023] (1) |
76018 [0.003] (2) |
76042 [0.001] (2) |
76068 [0.198] (0) |
76082 [0.002] (1) |
76099 [0.011] (2) |
76121 [0.001] (1) |
76242 [0.017] (0) |
76304 [0.110] (1) |
76310 [0.074] (1) |
76397 [0.006] (1) |
76406 [0.003] (1) |
76420 [0.701] (2) |
76428 [0.011] (0) |
76459 [0.002] (2) |
76583 [0.002] (1) |
Donor |
75063 [0.005] (1) |
75193 [0.011] (0) |
75297 [0.003] (1) |
75405 [0.006] (1) |
75495 [0.022] (1) |
75761 [0.74N] (2) |
75849 [0.019] (1) |
75875 [0.008] (2) |
76069 [0.92N/0.034] (0) |
76114 [0.026] (0) |
76126 [0.037] (0) |
76228 [0.034] (0) |
76270 [0.010] (0) |
76340 [0.009] (2) |
76344 [0.305] (1) |
76429 [0.005] (0) |
76520 [0.494] (2) |
76546 [0.74N/0.186] (0) |
76557 [0.011] (1) |
76561 [0.85N/0.576] (0) |
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