BLASTX alignment cluster 12    (68240..76485)


Local alignments in this cluster

gi|3046704|emb|CAA18234|[fasta] (AL022223) putative protein [Arabidopsis thaliana]
Length 1141 aa

position (link: detail on the area) subject position direction score

76485..75094 (1..464) - 269
75054..73792 (464..884) - 2178
73762..73169 (884..1081) - 1041
73061..72876 (1080..1141) - 325


gi|4512630|gb|AAD21699.1|[fasta] (AC004793) Contains reverse transcriptase domain (rvt) PF|00078. [Arabidopsis thaliana]
Length 1253 aa

position (link: detail on the area) subject position direction score

76200..74833 (53..508) - 191
74919..74257 (484..704) - 863
74202..74146 (703..721) - 65
74158..73874 (718..812) - 378
73693..73418 (812..903) - 178
73418..72933 (904..1065) - 582


gi|4539431|emb|CAB38964.1|[fasta] (T25K17) putative protein [Arabidopsis thaliana]
Length 431 aa

position (link: detail on the area) subject position direction score

72132..72422 (335..431) + 520
71894..72043 (285..334) + 259
70963..71868 (1..302) + 1539
69388..69666 (336..428) + 274
69158..69289 (289..332) + 124
69005..69079 (266..290) + 64
68855..69007 (217..267) + 65
68657..68806 (140..189) + 133
68546..68644 (101..133) + 66
68489..68575 (84..112) + 79
68411..68476 (55..76) + 84
68291..68380 (18..47) + 348


gi|3319372[fasta] (AF077409) similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13) [Arabidopsis thaliana]
Length 1164 aa

position (link: detail on the area) subject position direction score

76200..74155 (1..682) - 325
74158..73835 (682..789) - 372
73786..73418 (807..929) - 336
73418..73176 (930..1010) - 276


gi|4539430|emb|CAB38963.1|[fasta] (T25K17) putative protein [Arabidopsis thaliana]
Length 374 aa

position (link: detail on the area) subject position direction score

72135..72413 (282..374) + 274
71758..71829 (256..279) + 60
71611..71763 (206..256) + 65
71380..71529 (140..189) + 133
71212..71298 (84..112) + 79
71125..71190 (58..79) + 84
70963..71103 (1..47) + 164
69382..69666 (280..374) + 500
68240..69076 (1..279) + 143


show all (19) hits

   gi|3461840
   gi|4006833
   gi|4263828|gb|AAD15471|
   gi|3004545
   gi|3047086
   gi|3785984
   gi|3176712
   gi|3738337
   gi|4432866|gb|AAD20714|
   gi|4544421|gb|AAD22330.1|AC006955_16
   gi|4335738|gb|AAD17416|
   gi|2583130
   gi|4538901|emb|CAB39638.1|
   gi|2244803|emb|CAB10226.1|

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