HUGE

Gene/Protein Characteristic Table for KIAA2027

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :
Accession No. :	AB095947
Description :	G protein-regulated inducer of neurite outgrowth 3.
HUGO Gene Name :
Clone Name :	hg02843 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 6262 bp
Physical map
Restriction map
The cloned DNA sequence was revised by direct RT-PCR/sequencing experiments following the alert of coding interruption by GeneMark analysis.
Comparison between the cloned and the revised DNA sequences.
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. revised DNA seq.
Warning for N-terminal truncation:
NO NO

Warning for coding interruption:
YES NO

Integrity of 3' end

Length of 3'UTR 2846 bp

Genome contig ID gi89161207r_90285114
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
AGTTTTTTCCTTACTCTACCTGCACGACAACACAT
Flanking genome sequence
(99995 - 99946)
----+----*----+----*----+----*----+----*----+----*
TGGGTTGAAAGTTGTTTGGTTTTACCCTTCATTTCTCTTAGATATGATTT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 4 r 90385109 90391368 1 99.0 Perfect prediction

Features of the protein sequence	Description

Length: 802 aa
This protein sequence is predicted from the revised DNA sequence

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q6ZVF9	100.0	G protein-regul...	Homo sapiens
EAX06032	99.9	hypothetical pr...	Homo sapiens
AAI26372	99.7	GPRIN family me...	Homo sapiens
BAC85902	99.7	unnamed protein...	Homo sapiens
XP_001101149	94.2	hypothetical pr...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: ATAACTCAGCCTTTCACCACC

Primer_r
: GAAAATCCTGTAAAGCCACTC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 4

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.	revised DNA seq.
Warning for N-terminal truncation:	NO	NO
Warning for coding interruption:	YES	NO

Length of 3'UTR	2846 bp
Genome contig ID	gi89161207r_90285114
PolyA signal sequence (None)	+--------+--------+----*----+---- AGTTTTTTCCTTACTCTACCTGCACGACAACACAT
Flanking genome sequence (99995 - 99946)	----+--------+--------+--------+--------+----* TGGGTTGAAAGTTGTTTGGTTTTACCCTTCATTTCTCTTAGATATGATTT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	4	r	90385109	90391368	1	99.0	Perfect prediction

Primer_f	: ATAACTCAGCCTTTCACCACC
Primer_r	: GAAAATCCTGTAAAGCCACTC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA2027

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information