HUGE

Gene/Protein Characteristic Table for KIAA2024

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07274
Accession No. :	AB095944
Description :	Zinc finger protein 650.
HUGO Gene Name :	ubiquitin protein ligase E3 component n-recognin 3 (putative) (UBR3)
Clone Name :	ff08438 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4047 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2270 bp

Genome contig ID gi89161199f_170479559
PolyA signal sequence
(AATAAA,-17)
+----*----+----*----+----*----+----
AACATTGTAAGATATGTTAATAAAAACCTGCTGTC
Flanking genome sequence
(169304 - 169353)
----+----*----+----*----+----*----+----*----+----*
ATTTGGTTTGTGAAAGGTCCTTAAAATGTTTACTGCTTACATGTTTTTTT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 2 f 170579559 170648861 10 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 437 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAC87462	5.4e-207	100.0	unnamed protein...	Homo sapiens
BAC86783	5.5e-207	100.0	unnamed protein...	Homo sapiens
EAX11248	7e-207	100.0	zinc finger pro...	Homo sapiens
BAC87032	8.5e-207	99.8	unnamed protein...	Homo sapiens
Q6ZT12	1.1e-206	100.0	E3 ubiquitin-pr...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB002347	1.4e-18	25.4	KIAA0349

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AGTATAATCCCTGGAGAAAGC

Primer_r
: AAGGGTTGTGGCATCATTAAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 2

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2270 bp
Genome contig ID	gi89161199f_170479559
PolyA signal sequence (AATAAA,-17)	+--------+--------+----*----+---- AACATTGTAAGATATGTTAATAAAAACCTGCTGTC
Flanking genome sequence (169304 - 169353)	----+--------+--------+--------+--------+----* ATTTGGTTTGTGAAAGGTCCTTAAAATGTTTACTGCTTACATGTTTTTTT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	2	f	170579559	170648861	10	99.2	Perfect prediction

Primer_f	: AGTATAATCCCTGGAGAAAGC
Primer_r	: AAGGGTTGTGGCATCATTAAG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA2024

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information