HUGE

Gene/Protein Characteristic Table for KIAA2013

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00970
Accession No. :	AB095933
Description :
HUGO Gene Name :
Clone Name :	bm04064 [Vector Info]
Flexi ORF Clone :	pF1KSDA2013
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 2538 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 343 bp

Genome contig ID gi89161185r_11804999
PolyA signal sequence
(AATAAA,-9)
+----*----+----*----+----*----+----
TCAAAAAAGCAAAAAACAAAAAAGCAAATAAAAGT
Flanking genome sequence
(99820 - 99771)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAAAAAATTAGAGGCAGGGCCTGGTGGCTCATGCC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 r 11904819 11909072 2 99.5 Perfect prediction

Features of the protein sequence	Description

Length: 730 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_001143176	99.7	hypothetical pr...	Pan troglodytes
XP_001143405	99.8	hypothetical pr...	Pan troglodytes
XP_001143254	99.8	hypothetical pr...	Pan troglodytes
AAI57881	96.8	LOC728138 prote...	Homo sapiens
XP_535403	94.3	similar to CG72...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 37 EARAAGPVGWAAGPAAALAPLP 58 SECONDARY 22

2 85 LLCLLGLLLLLLWFGGSGA 103 PRIMARY 19

3 144 EVVPLGPGVPALVANGFLALDVA 166 SECONDARY 23

4 654 PFLFWFSVASLITLFHLFLFKLI 676 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	37	EARAAGPVGWAAGPAAALAPLP	58	SECONDARY	22
2	85	LLCLLGLLLLLLWFGGSGA	103	PRIMARY	19
3	144	EVVPLGPGVPALVANGFLALDVA	166	SECONDARY	23
4	654	PFLFWFSVASLITLFHLFLFKLI	676	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AGGAAATGCTGGAGCTCTTGG

Primer_r
: GCAGGAGAGCATGTAATAGAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	343 bp
Genome contig ID	gi89161185r_11804999
PolyA signal sequence (AATAAA,-9)	+--------+--------+----*----+---- TCAAAAAAGCAAAAAACAAAAAAGCAAATAAAAGT
Flanking genome sequence (99820 - 99771)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAAAAAATTAGAGGCAGGGCCTGGTGGCTCATGCC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	r	11904819	11909072	2	99.5	Perfect prediction

Primer_f	: AGGAAATGCTGGAGCTCTTGG
Primer_r	: GCAGGAGAGCATGTAATAGAG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA2013

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information