HUGE

Gene/Protein Characteristic Table for KIAA2012

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05744
Accession No. :	AB095932
Description :
HUGO Gene Name :
Clone Name :	ah04096 [Vector Info]
Source :	Human brain (amygdala)

Features of the cloned DNA sequence	Description

Length: 5133 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 812 bp

Genome contig ID gi89161199f_202608684
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CACTCCAGCCTGGGTGACAGAGCAAGACTCTCTTT
Flanking genome sequence
(162148 - 162197)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAAAAGGCAGGGGCTGCCGGGTGCAGTGGCTCATG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 2 f 202708684 202770830 10 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 555 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW70301	9.6e-61	88.6	hCG1776789, iso...	Homo sapiens
NP_001013793	2.2e-58	58.7	hypothetical pr...	Mus musculus
XP_576575	3.3e-53	56.7	hypothetical pr...	Rattus norvegicus
EDL98950	3.6e-29	78.5	rCG22344 [Rattu...	Rattus norvegicus
EDL00132	5.2e-29	78.0	mCG142695 [Mus ...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AAGAATTTTACACGCGCAAGC

Primer_r
: ATATCTGCTTCTGGGGTCTGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 2

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	812 bp
Genome contig ID	gi89161199f_202608684
PolyA signal sequence (None)	+--------+--------+----*----+---- CACTCCAGCCTGGGTGACAGAGCAAGACTCTCTTT
Flanking genome sequence (162148 - 162197)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAAAAGGCAGGGGCTGCCGGGTGCAGTGGCTCATG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	2	f	202708684	202770830	10	99.2	Perfect prediction

Primer_f	: AAGAATTTTACACGCGCAAGC
Primer_r	: ATATCTGCTTCTGGGGTCTGG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA2012

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information