HUGE

Gene/Protein Characteristic Table for KIAA1998

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05742
Accession No. :	AB082529
Description :	Rho-guanine nucleotide exchange factor.
HUGO Gene Name :
Clone Name :	bf00063 [Vector Info]
Flexi ORF Clone :	pF1KA1998
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 8407 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 6583 bp

Genome contig ID gi51511721f_72916419
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CTCCAGCCTAGGCAACGAGAGCAAAACTCCATCTC
Flanking genome sequence
(270896 - 270945)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAGTTAAAGTGTCGTGTTGTAGAAGTATGAAGGATATA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 5 f 73016418 73187313 12 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 607 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAC04405	100.0	unnamed protein...	Homo sapiens
AAI67854	100.0	Rho-guanine nuc...	synthetic construct
AAI71850	100.0	RGNEF protein [...	Homo sapiens
Q8N1W1	100.0	Rho-guanine nuc...	Homo sapiens
AAI57847	99.8	RGNEF protein [...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TGGATTTTTGCCTAGTAGCCC

Primer_r
: AATCATGCTTGCACACTGGTC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 5

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	6583 bp
Genome contig ID	gi51511721f_72916419
PolyA signal sequence (None)	+--------+--------+----*----+---- CTCCAGCCTAGGCAACGAGAGCAAAACTCCATCTC
Flanking genome sequence (270896 - 270945)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAGTTAAAGTGTCGTGTTGTAGAAGTATGAAGGATATA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	5	f	73016418	73187313	12	99.2	Perfect prediction

Primer_f	: TGGATTTTTGCCTAGTAGCCC
Primer_r	: AATCATGCTTGCACACTGGTC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1998

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information