HUGE

Gene/Protein Characteristic Table for KIAA1967

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05733
Accession No. :	AB075847
Description :	p30 DBC protein.
HUGO Gene Name :
Clone Name :	fj04244 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 3579 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1067 bp

Genome contig ID gi51511724f_22420366
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
TTGGCTTGTTTTTTAAATAAACCAAAGTCAAAAAC
Flanking genome sequence
(113562 - 113611)
----+----*----+----*----+----*----+----*----+----*
AAACTGAGAGTGTGTCCTCCACAGCTCTTCCTACTCTCCTAGGCTTGCCC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 8 f 22520135 22533926 17 99.6 Perfect prediction

Features of the protein sequence	Description

Length: 818 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
CAL38698	98.7	hypothetical pr...	synthetic construct
BAG53111	98.6	unnamed protein...	Homo sapiens
CAL37584	98.6	hypothetical pr...	synthetic construct
CAD38866	98.6	hypothetical pr...	Homo sapiens
XP_519650	98.4	hypothetical pr...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CTTTTGCACCCCTAGAATGTC

Primer_r
: GCTCTTCAATTCCGTTCACTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 8

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1067 bp
Genome contig ID	gi51511724f_22420366
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- TTGGCTTGTTTTTTAAATAAACCAAAGTCAAAAAC
Flanking genome sequence (113562 - 113611)	----+--------+--------+--------+--------+----* AAACTGAGAGTGTGTCCTCCACAGCTCTTCCTACTCTCCTAGGCTTGCCC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	8	f	22520135	22533926	17	99.6	Perfect prediction

Primer_f	: CTTTTGCACCCCTAGAATGTC
Primer_r	: GCTCTTCAATTCCGTTCACTG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1967

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information