HUGE

Gene/Protein Characteristic Table for KIAA1913

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00298
Accession No. :	AB067500
Description :
HUGO Gene Name :
Clone Name :	fk05496 [Vector Info]
Flexi ORF Clone :	pF1KA1913
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 3512 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1165 bp

Genome contig ID gi89161210f_130628572
PolyA signal sequence
(AATAAA,-30)
+----*----+----*----+----*----+----
AAGATAATAAATATTAAAATGGATGTTTTCATCAG
Flanking genome sequence
(177331 - 177380)
----+----*----+----*----+----*----+----*----+----*
AAAATTTTCATGTTTTCCTTTAAGGTAACATAATTGTAAGAATTGTTTAA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 6 f 130728572 130805901 3 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 509 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_001504320	5.3e-188	94.5	transmembrane p...	Equus caballus
XP_589121	2.2e-186	93.7	similar to tran...	Bos taurus
XP_001927918	7.4e-186	92.7	transmembrane p...	Sus scrofa
Q8C817	1.5e-182	90.6	Transmembrane p...	Mus musculus
BAC27929	4.9e-182	90.4	unnamed protein...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 15 KGQAMIATGGVITGLAAL 32 SECONDARY 18

2 74 RLYSPSGFFLILGVLISIIGIAM 96 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	15	KGQAMIATGGVITGLAAL	32	SECONDARY	18
2	74	RLYSPSGFFLILGVLISIIGIAM	96	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GTTTGGGTTACTTGTGACTGC

Primer_r
: GTACTCCTGGTCCACACTTTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 6

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1165 bp
Genome contig ID	gi89161210f_130628572
PolyA signal sequence (AATAAA,-30)	+--------+--------+----*----+---- AAGATAATAAATATTAAAATGGATGTTTTCATCAG
Flanking genome sequence (177331 - 177380)	----+--------+--------+--------+--------+----* AAAATTTTCATGTTTTCCTTTAAGGTAACATAATTGTAAGAATTGTTTAA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	6	f	130728572	130805901	3	100.0	Perfect prediction

Primer_f	: GTTTGGGTTACTTGTGACTGC
Primer_r	: GTACTCCTGGTCCACACTTTG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1913

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information