HUGE

Gene/Protein Characteristic Table for KIAA1828

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05341
Accession No. :	AB058731
Description :	Probable G-protein coupled receptor 123.
HUGO Gene Name :	G protein-coupled receptor 123 (GPR123)
Clone Name :	ha06249 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 3536 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2015 bp

Genome contig ID gi89161187f_134665740
PolyA signal sequence
(AATACA,-20)
+----*----+----*----+----*----+----
AACCGTCCACACAAAAATACAGTCTTGGCATTGTT
Flanking genome sequence
(129184 - 129233)
----+----*----+----*----+----*----+----*----+----*
TGTTCTTTGTGAGGCTGGTTAATAGCATCCCCGTGTGTTTTTCTCACCCT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 10 f 134765740 134794922 5 99.5 Internal No-hit

Features of the protein sequence	Description

Length: 496 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
ABQ08572	1.8e-195	100.0	G protein-coupl...	Homo sapiens
EAW61312	3.3e-195	100.0	G protein-coupl...	Homo sapiens
Q86SQ6	5.1e-194	99.8	Probable G-prot...	Homo sapiens
EAW61313	5.1e-194	99.8	G protein-coupl...	Homo sapiens
AAO27353	5.1e-194	99.8	G protein-coupl...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB040964	1.1e-13	39.0	KIAA1531

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

ProfileScan IPR000832 22 246 PS50261 GPCR

ScanRegExp IPR000832 234 249 PS00650 GPCR

Search method	interpro_ID	From	To	Entry	Definition
ProfileScan	IPR000832	22	246	PS50261	GPCR
ScanRegExp	IPR000832	234	249	PS00650	GPCR

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 19 PIQVGIVLHYSTLSTMLWIGVTA 41 SECONDARY 23

2 68 LLRFYLVSGGVPFIICGVTAATN 90 SECONDARY 23

3 115 FYGPAAIITLVTCVYFLGTYVQ 136 PRIMARY 22

4 192 LRAAAFTLFLFTATWAFGALAVS 214 SECONDARY 23

5 221 MVFSCLYGAFCVTLGLFVLIHHC 243 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	19	PIQVGIVLHYSTLSTMLWIGVTA	41	SECONDARY	23
2	68	LLRFYLVSGGVPFIICGVTAATN	90	SECONDARY	23
3	115	FYGPAAIITLVTCVYFLGTYVQ	136	PRIMARY	22
4	192	LRAAAFTLFLFTATWAFGALAVS	214	SECONDARY	23
5	221	MVFSCLYGAFCVTLGLFVLIHHC	243	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: ATCTACAAGCAGGTGACCAAG

Primer_r
: TCCTCTGTCCCGTAATTCCTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 10

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2015 bp
Genome contig ID	gi89161187f_134665740
PolyA signal sequence (AATACA,-20)	+--------+--------+----*----+---- AACCGTCCACACAAAAATACAGTCTTGGCATTGTT
Flanking genome sequence (129184 - 129233)	----+--------+--------+--------+--------+----* TGTTCTTTGTGAGGCTGGTTAATAGCATCCCCGTGTGTTTTTCTCACCCT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	10	f	134765740	134794922	5	99.5	Internal No-hit

Primer_f	: ATCTACAAGCAGGTGACCAAG
Primer_r	: TCCTCTGTCCCGTAATTCCTG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1828

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information