HUGE

Gene/Protein Characteristic Table for KIAA1826

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00284
Accession No. :	AB058729
Description :	DC25.
HUGO Gene Name :
Clone Name :	fj12317 [Vector Info]
Flexi ORF Clone :	pF1KA1826
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4066 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1612 bp

Genome contig ID gi51511727r_105283860
PolyA signal sequence
(AATAAA,-24)
+----*----+----*----+----*----+----
TCTATATCTGAAATAAATGCTTCTACCATAGAAAT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAATTTGCCTATACTATCTGAGAATTTGTAATTTCAGATGATACTCAGTG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 11 r 105383860 105398164 3 99.5 Perfect prediction

Features of the protein sequence	Description

Length: 380 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAE88732	3.5e-110	99.7	unnamed protein...	Macaca fascicularis
EDL09327	2.8e-108	89.5	RIKEN cDNA 8430...	Mus musculus
AAH84111	1.3e-41	63.2	LOC495021 prote...	Xenopus laevis
AAH76739	7.6e-37	62.0	MGC81432 protei...	Xenopus laevis
AAG44625	2.7e-28	99.0	DC25 [Homo sapi...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 6 SKELSLVFVLCSIPQIVFTSLTI 28 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	6	SKELSLVFVLCSIPQIVFTSLTI	28	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTGGGAAGAGATTGCACAGTG

Primer_r
: AGAGAGTCATCCAAATCAGAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 11

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1612 bp
Genome contig ID	gi51511727r_105283860
PolyA signal sequence (AATAAA,-24)	+--------+--------+----*----+---- TCTATATCTGAAATAAATGCTTCTACCATAGAAAT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAATTTGCCTATACTATCTGAGAATTTGTAATTTCAGATGATACTCAGTG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	11	r	105383860	105398164	3	99.5	Perfect prediction

Primer_f	: TTGGGAAGAGATTGCACAGTG
Primer_r	: AGAGAGTCATCCAAATCAGAG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1826

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information