HUGE

Gene/Protein Characteristic Table for KIAA1680

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05701
Accession No. :	AB051467
Description :
HUGO Gene Name :
Clone Name :	fh23414 [Vector Info]
Flexi ORF Clone :	pF1KA1680
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 5833 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2842 bp

Genome contig ID gi89161207f_91167759
PolyA signal sequence
(AATAAA,-31)
+----*----+----*----+----*----+----
CTGAAATAAACTGTTCCCATTTTTATAATTATTGG
Flanking genome sequence
(1574316 - 1574365)
----+----*----+----*----+----*----+----*----+----*
AACATGAAACTGTATTTCTATGAACTCAATGATTTTTTTCCATAAAATTA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 4 f 91267759 92742073 7 99.4 Internal No-hit

Features of the protein sequence	Description

Length: 902 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_001095828	0	97.4	similar to gran...	Macaca mulatta
XP_001162951	0	98.5	hypothetical pr...	Pan troglodytes
XP_001495561	0	90.1	hypothetical pr...	Equus caballus
EDK98765	4.1e-203	79.1	mCG122811, isof...	Mus musculus
XP_420481	3.1e-162	66.0	hypothetical pr...	Gallus gallus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CATCTAAAGTTCCCACCATAC

Primer_r
: ACAGACACCAACATTTAGGAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 4

Experimental conditions

Panel name	: CCR
Primer_f	: CATCTAAAGTTCCCACCATAC
Primer_r	: ACAGACACCAACATTTAGGAC
PCR product length	: 153 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2842 bp
Genome contig ID	gi89161207f_91167759
PolyA signal sequence (AATAAA,-31)	+--------+--------+----*----+---- CTGAAATAAACTGTTCCCATTTTTATAATTATTGG
Flanking genome sequence (1574316 - 1574365)	----+--------+--------+--------+--------+----* AACATGAAACTGTATTTCTATGAACTCAATGATTTTTTTCCATAAAATTA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	4	f	91267759	92742073	7	99.4	Internal No-hit

Gene/Protein Characteristic Table for KIAA1680

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information