HUGE

Gene/Protein Characteristic Table for KIAA1672

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04856
Accession No. :	AB051459
Description :	DJ-1-binding protein.
HUGO Gene Name :	EF-hand calcium binding domain 6 (EFCAB6)
Clone Name :	hj02515 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5168 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
YES

Features of the protein sequence	Description

Length: 395 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW73310	4.5e-164	100.0	hCG17297, isofo...	Homo sapiens
EAW73309	3e-148	100.0	hCG17297, isofo...	Homo sapiens
EAW73308	3.1e-148	100.0	hCG17297, isofo...	Homo sapiens
CAQ10020	4.3e-148	100.0	EF-hand calcium...	Homo sapiens
Q5THR3	4.7e-148	100.0	EF-hand calcium...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR002048 33 56 PF00036 Calcium-binding EF-hand

IPR002048 219 247 PF00036 Calcium-binding EF-hand

IPR002048 326 354 PF00036 Calcium-binding EF-hand

HMMSmart IPR002048 33 61 SM00054 Calcium-binding EF-hand

IPR002048 219 247 SM00054 Calcium-binding EF-hand

IPR002048 326 354 SM00054 Calcium-binding EF-hand

ProfileScan IPR002048 29 64 PS50222 Calcium-binding EF-hand

IPR002048 110 145 PS50222 Calcium-binding EF-hand

IPR002048 215 250 PS50222 Calcium-binding EF-hand

IPR002048 322 357 PS50222 Calcium-binding EF-hand

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002048	33	56	PF00036	Calcium-binding EF-hand
IPR002048	219	247	PF00036	Calcium-binding EF-hand
IPR002048	326	354	PF00036	Calcium-binding EF-hand
HMMSmart	IPR002048	33	61	SM00054	Calcium-binding EF-hand
IPR002048	219	247	SM00054	Calcium-binding EF-hand
IPR002048	326	354	SM00054	Calcium-binding EF-hand
ProfileScan	IPR002048	29	64	PS50222	Calcium-binding EF-hand
IPR002048	110	145	PS50222	Calcium-binding EF-hand
IPR002048	215	250	PS50222	Calcium-binding EF-hand
IPR002048	322	357	PS50222	Calcium-binding EF-hand

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 22

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	YES

Gene/Protein Characteristic Table for KIAA1672

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information