HUGE

Gene/Protein Characteristic Table for KIAA1601

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK06897
Accession No. :	AB046821
Description :	sarcolemma associated protein.
HUGO Gene Name :	sarcolemma associated protein (SLMAP)
Clone Name :	fj10228 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 3851 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1778 bp

Genome contig ID gi89161205f_57702083
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
CGTGCATGATTTAATAAAATAACTTTACTCTCCCT
Flanking genome sequence
(187853 - 187902)
----+----*----+----*----+----*----+----*----+----*
ACGCATGTTTGAGTTGAATATCATTGAAGTTCTTAATGCTGACTCTACTA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 3 f 57802083 57889934 19 99.5 Perfect prediction

Features of the protein sequence	Description

Length: 690 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW65350	1.5e-190	100.0	sarcolemma asso...	Homo sapiens
XP_001173855	5.4e-190	99.7	sarcolemma asso...	Pan troglodytes
XP_001098312	2.9e-189	99.3	similar to sarc...	Macaca mulatta
XP_857009	5.8e-187	97.8	similar to sarc...	Canis lupus fam...
XP_001489635	4.8e-186	97.2	sarcolemma asso...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB058696	8.5e-07	31.0	KIAA1793
AB046785	0.00021	22.4	KIAA1565
AB037740	0.00039	24.9	KIAA1319

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR002777 408 499 PF01920 Prefoldin beta-like

ScanRegExp IPR001363 529 538 PS01255 Proteinase inhibitor I25C

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002777	408	499	PF01920	Prefoldin beta-like
ScanRegExp	IPR001363	529	538	PS01255	Proteinase inhibitor I25C

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 667 PMLAALVAVTAIVLYVPGLARAS 689 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	667	PMLAALVAVTAIVLYVPGLARAS	689	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TATCATCAGAACTGCAACGGC

Primer_r
: GCTTGGTTTTCTGCCTTACTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 3

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1778 bp
Genome contig ID	gi89161205f_57702083
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- CGTGCATGATTTAATAAAATAACTTTACTCTCCCT
Flanking genome sequence (187853 - 187902)	----+--------+--------+--------+--------+----* ACGCATGTTTGAGTTGAATATCATTGAAGTTCTTAATGCTGACTCTACTA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	3	f	57802083	57889934	19	99.5	Perfect prediction

Primer_f	: TATCATCAGAACTGCAACGGC
Primer_r	: GCTTGGTTTTCTGCCTTACTG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1601

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information