HUGE |
Gene/Protein Characteristic Table for KIAA1580 |
Link to :
Rouge |
GTOP | SWISS-PROT/TrEMBL | GeneCards| RefDIC | |
Features : DNA sequence | Protein sequence | Expression | Mapping | |
Product ID : | ORK00868 |
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Accession No. : | AB046800 |
Description : | Netrin-G1 ligand precursor. |
HUGO Gene Name : | leucine rich repeat containing 4C (LRRC4C) |
Clone Name : | fj04979 [Vector Info] |
Flexi ORF Clone : | pF1KSDA1580
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Source : | Human fetal brain |
Features of the cloned DNA sequence |
Description | |
---|---|---|
Length: 4055 bp
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cloned DNA seq. | |
Warning for N-terminal truncation: | NO |
Warning for coding interruption: | NO |
Length of 3'UTR 167 bp Genome contig ID gi51511727r_39992329 PolyA signal sequence
(ATTAAA,-31) +----*----+----*----+----*----+----
ATTTATTAAAAATTCTATTGTGATCTAAAGCAGACFlanking genome sequence
(100000 - 99951) ----+----*----+----*----+----*----+----*----+----*
AAAATTATGTGTATTCCTCAGAACCTGTTTTTGCTGCACTTATTCACTAT
Chr f/r start end exon identity class ContigView(URL based/DAS) 11 r 40092329 40272240 2 99.5 Perfect prediction
Features of the protein sequence |
Description | |
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Length: 640 aa
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Search method | interpro_ID | From | To | Entry | Definition |
---|---|---|---|---|---|
FPrintScan | IPR001611 | 221 | 234 | PR00019 | Leucine-rich repeat |
IPR001611 | 266 | 279 | PR00019 | Leucine-rich repeat | |
HMMPfam | IPR000372 | 46 | 75 | PF01462 | Leucine-rich repeat |
IPR001611 | 77 | 99 | PF00560 | Leucine-rich repeat | |
IPR001611 | 101 | 123 | PF00560 | Leucine-rich repeat | |
IPR001611 | 125 | 147 | PF00560 | Leucine-rich repeat | |
IPR001611 | 149 | 171 | PF00560 | Leucine-rich repeat | |
IPR001611 | 198 | 218 | PF00560 | Leucine-rich repeat | |
IPR001611 | 220 | 242 | PF00560 | Leucine-rich repeat | |
IPR001611 | 268 | 290 | PF00560 | Leucine-rich repeat | |
IPR013098 | 354 | 443 | PF07679 | Immunoglobulin I-set | |
HMMSmart | IPR000372 | 46 | 80 | SM00013 | Leucine-rich repeat |
IPR003591 | 79 | 98 | SM00369 | Leucine-rich repeat | |
IPR003591 | 99 | 122 | SM00369 | Leucine-rich repeat | |
IPR003591 | 123 | 146 | SM00369 | Leucine-rich repeat | |
IPR003591 | 147 | 170 | SM00369 | Leucine-rich repeat | |
IPR003591 | 196 | 217 | SM00369 | Leucine-rich repeat | |
IPR003591 | 218 | 241 | SM00369 | Leucine-rich repeat | |
IPR003591 | 242 | 265 | SM00369 | Leucine-rich repeat | |
IPR003591 | 266 | 289 | SM00369 | Leucine-rich repeat | |
IPR003599 | 360 | 444 | SM00409 | Immunoglobulin subtype | |
IPR003598 | 366 | 433 | SM00408 | Immunoglobulin subtype 2 | |
IPR003596 | 370 | 428 | SM00406 | Immunoglobulin V-set | |
ProfileScan | IPR007110 | 354 | 442 | PS50835 | Immunoglobulin-like |
Method | No. | N terminal | transmembrane region | C terminal | type | length |
---|---|---|---|---|---|---|
SOSUI2 | 1 | 22 | LFDPLLVVLLALQLLVVAGLVRA | 44 | PRIMARY | 23 |
2 | 523 | MKTTKIIIGCFVAITLMAAVMLV | 545 | PRIMARY | 23 |
Expression profile |
Description | |
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RT-PCR-ELISA | Description |
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Experimental conditions
: AACGGAATGCCTTTGACAACC | |
: GTCACAGTTACAGTTCCAAGG | |
: 95 °C |
RH mapping information |
Description | |
---|---|---|
: 11 |
: RH-map | |
: AACGGAATGCCTTTGACAACC | |
: GTCACAGTTACAGTTCCAAGG | |
: 149 bp | |
: 95 °C |
How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage ![]() | |