HUGE

Gene/Protein Characteristic Table for KIAA1482

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00848
Accession No. :	AB040915
Description :	Stromal interaction molecule 2 precursor.
HUGO Gene Name :
Clone Name :	fj06205 [Vector Info]
Flexi ORF Clone :	pF1KSDA1482
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4841 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2384 bp

Genome contig ID gi89161207f_26371723
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
TTTCCTGATTTTAAAAGCAATATTTTCCTTACTGT
Flanking genome sequence
(264380 - 264429)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAGATCGATGATAGAAAAGTATAAAGAAGAAAATA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 4 f 26471723 26636101 12 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 818 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
NP_065911	100.0	stromal interac...	Homo sapiens
EAW92854	100.0	stromal interac...	Homo sapiens
XP_001166908	99.9	stromal interac...	Pan troglodytes
XP_001166846	98.9	stromal interac...	Pan troglodytes
AAI71766	98.8	Unknown (protei...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR011510 205 276 PF07647 Sterile alpha motif homology 2

ProfileScan IPR001660 208 266 PS50105 Sterile alpha motif SAM

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR011510	205	276	PF07647	Sterile alpha motif homology 2
ProfileScan	IPR001660	208	266	PS50105	Sterile alpha motif SAM

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 285 NWMKDFILTVSIVIGVGGCWFA 306 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	285	NWMKDFILTVSIVIGVGGCWFA	306	PRIMARY	22

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CAGTTGGATGAATAGAGAAGG

Primer_r
: ACAAACAATGCACATGCTCCC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 4

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2384 bp
Genome contig ID	gi89161207f_26371723
PolyA signal sequence (None)	+--------+--------+----*----+---- TTTCCTGATTTTAAAAGCAATATTTTCCTTACTGT
Flanking genome sequence (264380 - 264429)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAGATCGATGATAGAAAAGTATAAAGAAGAAAATA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	4	f	26471723	26636101	12	99.4	Perfect prediction

Primer_f	: CAGTTGGATGAATAGAGAAGG
Primer_r	: ACAAACAATGCACATGCTCCC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1482

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information