HUGE

Gene/Protein Characteristic Table for KIAA1456

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00842
Accession No. :	AB040889
Description :
HUGO Gene Name :	chromosome 8 open reading frame 79 (C8orf79)
Clone Name :	fh16084 [Vector Info]
Flexi ORF Clone :	pF1KSDA1456
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 5759 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4128 bp

Genome contig ID gi51511724f_12814476
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
ATGGGAACCAACCACCAGACAAGCAGCTGCAGTCT
Flanking genome sequence
(113571 - 113620)
----+----*----+----*----+----*----+----*----+----*
AAGAAAAACAAATTAGGGCAGGCCTCAGCATCTCTTTCCTATTACATAGA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 8 f 12914144 12928045 2 99.0 Perfect prediction

Features of the protein sequence	Description

Length: 421 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
AAH16633	1.5e-175	100.0	C8orf79 protein...	Homo sapiens
NP_065895	7.2e-174	99.0	hypothetical pr...	Homo sapiens
BAG10072	1e-158	100.0	C8orf79 protein...	synthetic construct
XP_540002	6.2e-141	80.2	similar to CG17...	Canis lupus fam...
XP_001487893	7.2e-141	82.7	similar to CG17...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR013216 16 106 PF08241 Methyltransferase type 11

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR013216	16	106	PF08241	Methyltransferase type 11

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TGACCTAGCTGGAGTAATCTG

Primer_r
: TAAGACTCCTCCAATAAACCC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 8

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TGACCTAGCTGGAGTAATCTG
Primer_r	: TAAGACTCCTCCAATAAACCC
PCR product length	: 155 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	4128 bp
Genome contig ID	gi51511724f_12814476
PolyA signal sequence (None)	+--------+--------+----*----+---- ATGGGAACCAACCACCAGACAAGCAGCTGCAGTCT
Flanking genome sequence (113571 - 113620)	----+--------+--------+--------+--------+----* AAGAAAAACAAATTAGGGCAGGCCTCAGCATCTCTTTCCTATTACATAGA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	8	f	12914144	12928045	2	99.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA1456

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information