HUGE

Gene/Protein Characteristic Table for KIAA1303

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK06594
Accession No. :	AB037724
Description :	Regulatory-associated protein of mTOR.
HUGO Gene Name :
Clone Name :	fg07086 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 5538 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 2043 bp

Genome contig ID gi51511734f_76231682
PolyA signal sequence
(AGTAAA,-22)
+----*----+----*----+----*----+----
GAGAGTGACCAACAGTAAACAACACGCGCAGACTC
Flanking genome sequence
(323086 - 323135)
----+----*----+----*----+----*----+----*----+----*
CGCGGCTGGCGGCTGTGTCTTTAAGGAAACTGCCCACCCCACCTCAGGGG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 17 f 76331682 76554766 30 99.5 Perfect prediction

Features of the protein sequence	Description

Length: 1119 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q8N122	99.9	Regulatory-asso...	Homo sapiens
XP_511729	99.2	raptor isoform ...	Pan troglodytes
XP_001161716	99.2	raptor isoform ...	Pan troglodytes
EAW89619	100.0	raptor, isoform...	Homo sapiens
XP_001110429	98.5	similar to rapt...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR004083 42 62 PR01547 Regulatory associated protein of TOR

IPR004083 82 109 PR01547 Regulatory associated protein of TOR

IPR004083 117 141 PR01547 Regulatory associated protein of TOR

IPR004083 192 222 PR01547 Regulatory associated protein of TOR

IPR004083 223 244 PR01547 Regulatory associated protein of TOR

IPR004083 246 265 PR01547 Regulatory associated protein of TOR

IPR004083 270 286 PR01547 Regulatory associated protein of TOR

IPR004083 962 980 PR01547 Regulatory associated protein of TOR

HMMPfam IPR000357 335 372 PF02985 HEAT

IPR000357 382 414 PF02985 HEAT

IPR000357 589 625 PF02985 HEAT

IPR001680 863 881 PF00400 WD40 repeat

IPR001680 940 978 PF00400 WD40 repeat

IPR001680 985 1024 PF00400 WD40 repeat

IPR001680 1086 1113 PF00400 WD40 repeat

HMMSmart IPR001680 796 834 SM00320 WD40 repeat

IPR001680 836 881 SM00320 WD40 repeat

IPR001680 889 935 SM00320 WD40 repeat

IPR001680 938 978 SM00320 WD40 repeat

IPR001680 984 1024 SM00320 WD40 repeat

IPR001680 1030 1065 SM00320 WD40 repeat

IPR001680 1067 1113 SM00320 WD40 repeat

ProfileScan IPR001680 903 1033 PS50294 WD40 repeat

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR004083	42	62	PR01547	Regulatory associated protein of TOR
IPR004083	82	109	PR01547	Regulatory associated protein of TOR
IPR004083	117	141	PR01547	Regulatory associated protein of TOR
IPR004083	192	222	PR01547	Regulatory associated protein of TOR
IPR004083	223	244	PR01547	Regulatory associated protein of TOR
IPR004083	246	265	PR01547	Regulatory associated protein of TOR
IPR004083	270	286	PR01547	Regulatory associated protein of TOR
IPR004083	962	980	PR01547	Regulatory associated protein of TOR
HMMPfam	IPR000357	335	372	PF02985	HEAT
IPR000357	382	414	PF02985	HEAT
IPR000357	589	625	PF02985	HEAT
IPR001680	863	881	PF00400	WD40 repeat
IPR001680	940	978	PF00400	WD40 repeat
IPR001680	985	1024	PF00400	WD40 repeat
IPR001680	1086	1113	PF00400	WD40 repeat
HMMSmart	IPR001680	796	834	SM00320	WD40 repeat
IPR001680	836	881	SM00320	WD40 repeat
IPR001680	889	935	SM00320	WD40 repeat
IPR001680	938	978	SM00320	WD40 repeat
IPR001680	984	1024	SM00320	WD40 repeat
IPR001680	1030	1065	SM00320	WD40 repeat
IPR001680	1067	1113	SM00320	WD40 repeat
ProfileScan	IPR001680	903	1033	PS50294	WD40 repeat

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 236 LLGRFLDLGPWAVSLALSVGIFP 258 PRIMARY 23

2 317 TMTAFILAVIVNSYHTGQEACLQ 339 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	236	LLGRFLDLGPWAVSLALSVGIFP	258	PRIMARY	23
2	317	TMTAFILAVIVNSYHTGQEACLQ	339	SECONDARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GCCTGAAGGAGATGTCTAACC

Primer_r
: GCAGTTTTTCATCGACGGAGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 17

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	YES

Length of 3'UTR	2043 bp
Genome contig ID	gi51511734f_76231682
PolyA signal sequence (AGTAAA,-22)	+--------+--------+----*----+---- GAGAGTGACCAACAGTAAACAACACGCGCAGACTC
Flanking genome sequence (323086 - 323135)	----+--------+--------+--------+--------+----* CGCGGCTGGCGGCTGTGTCTTTAAGGAAACTGCCCACCCCACCTCAGGGG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	17	f	76331682	76554766	30	99.5	Perfect prediction

Primer_f	: GCCTGAAGGAGATGTCTAACC
Primer_r	: GCAGTTTTTCATCGACGGAGG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1303

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information