HUGE

Gene/Protein Characteristic Table for KIAA1209

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK06396
Accession No. :	AB033035
Description :	Pleckstrin homology domain-containing family G member 1.
HUGO Gene Name :	pleckstrin homology domain containing, family G (with RhoGef domain) member 1 (PLEKHG1)
Clone Name :	fg05970 [Vector Info]
Flexi ORF Clone :	pF1KA1209
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 6110 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2767 bp

Genome contig ID gi89161210f_151067474
PolyA signal sequence
(AATAAA,-24)
+----*----+----*----+----*----+----
GTCCATTATTTAATAAAGTTTGTAAAGTACAAGGT
Flanking genome sequence
(139020 - 139069)
----+----*----+----*----+----*----+----*----+----*
AATTTATAGTGTGAATTAATGTGTTTATTTTAGAACATCAAGATGTTTCC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 6 f 151167474 151206492 10 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 1113 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAH89428	100.0	PLEKHG1 protein...	Homo sapiens
Q9ULL1	100.0	Pleckstrin homo...	Homo sapiens
BAG10439	100.0	pleckstrin homo...	synthetic construct
XP_001135825	99.2	pleckstrin homo...	Pan troglodytes
XP_001135904	99.2	pleckstrin homo...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR001849 52 144 PF00169 Pleckstrin-like

HMMSmart IPR001849 52 146 SM00233 Pleckstrin-like

ProfileScan IPR001849 45 144 PS50003 Pleckstrin-like

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001849	52	144	PF00169	Pleckstrin-like
HMMSmart	IPR001849	52	146	SM00233	Pleckstrin-like
ProfileScan	IPR001849	45	144	PS50003	Pleckstrin-like

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTATCACAGGTCCCAGTCATC

Primer_r
: TTCTGTGAGTCTTGGAGTGTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 6

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2767 bp
Genome contig ID	gi89161210f_151067474
PolyA signal sequence (AATAAA,-24)	+--------+--------+----*----+---- GTCCATTATTTAATAAAGTTTGTAAAGTACAAGGT
Flanking genome sequence (139020 - 139069)	----+--------+--------+--------+--------+----* AATTTATAGTGTGAATTAATGTGTTTATTTTAGAACATCAAGATGTTTCC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	6	f	151167474	151206492	10	100.0	Perfect prediction

Primer_f	: TTATCACAGGTCCCAGTCATC
Primer_r	: TTCTGTGAGTCTTGGAGTGTG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1209

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information