HUGE

Gene/Protein Characteristic Table for KIAA1171

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00755
Accession No. :	AB032997
Description :	TBC1 domain family member 24.
HUGO Gene Name :	TBC1 domain family, member 24 (TBC1D24)
Clone Name :	hh05501s1 [Vector Info]
Flexi ORF Clone :	pF1KSDA1171
Source :	Human adult brain
Note :	We replaced hh05501, former representative clones for KIAA1171 with hh05501s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 4340 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2527 bp

Genome contig ID gi51511732f_2386034
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
GGCTGCTCTGCCTATGAAGTAGCCATTCTTTGTTT
Flanking genome sequence
(107455 - 107504)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAGCCAACATTTGTTGAAACTGCATAATAAATTATCATT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 16 f 2465155 2493487 8 99.8 Perfect prediction

Features of the protein sequence	Description

Length: 595 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAG09985	100.0	TBC1 domain fam...	synthetic construct
Q9ULP9	99.8	TBC1 domain fam...	Homo sapiens
XP_001085824	98.7	similar to CG93...	Macaca mulatta
AAI12390	98.7	TBC1 domain fam...	Homo sapiens
XP_001085929	97.7	similar to CG93...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB028978	4.3e-06	24.7	KIAA1055
AB020689	0.00089	24.3	KIAA0882

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000195 83 298 PF00566 RabGAP/TBC

IPR006571 404 590 PF07534 TLDc

HMMSmart IPR000195 78 295 SM00164 RabGAP/TBC

IPR006571 378 590 SM00584 TLDc

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000195	83	298	PF00566	RabGAP/TBC
IPR006571	404	590	PF07534	TLDc
HMMSmart	IPR000195	78	295	SM00164	RabGAP/TBC
IPR006571	378	590	SM00584	TLDc

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 164 ISFCPALPAVVALLLHYSIDEAE 186 PRIMARY 23

2 260 YFARVFDVFLVEGYKVLYRVALA 282 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	164	ISFCPALPAVVALLLHYSIDEAE	186	PRIMARY	23
2	260	YFARVFDVFLVEGYKVLYRVALA	282	SECONDARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CTATGACTGGAATGCTGCAAG

Primer_r
: AACCTGCTGGACTTAACTCGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 16

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2527 bp
Genome contig ID	gi51511732f_2386034
PolyA signal sequence (None)	+--------+--------+----*----+---- GGCTGCTCTGCCTATGAAGTAGCCATTCTTTGTTT
Flanking genome sequence (107455 - 107504)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAGCCAACATTTGTTGAAACTGCATAATAAATTATCATT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	16	f	2465155	2493487	8	99.8	Perfect prediction

Primer_f	: CTATGACTGGAATGCTGCAAG
Primer_r	: AACCTGCTGGACTTAACTCGC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1171

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information