HUGE

Gene/Protein Characteristic Table for KIAA1157

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK06453
Accession No. :	AB032983
Description :	Protein phosphatase 1H.
HUGO Gene Name :	protein phosphatase 1H (PP2C domain containing) (PPM1H)
Clone Name :	hh05862 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5791 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4504 bp

Genome contig ID gi89161190r_61224066
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
AAATATTATATATATGTATATACGACATATTCAGC
Flanking genome sequence
(99967 - 99918)
----+----*----+----*----+----*----+----*----+----*
AAAACTTTTTTCTGTCTTTTCTATGAATTCACTGTGAAGTTTCTTTGTAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 12 r 61324033 61512313 9 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 428 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW97111	9.2e-182	100.0	hCG40446, isofo...	Homo sapiens
AAI57844	9.8e-182	100.0	Protein phospha...	Homo sapiens
Q9ULR3	9.8e-182	100.0	Protein phospha...	Homo sapiens
XP_001116776	1e-180	98.8	similar to prot...	Macaca mulatta
XP_871615	2.6e-177	96.5	similar to Prot...	Bos taurus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB037769	0.00076	25.3	KIAA1348

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR014045 24 400 PF00481 Protein phosphatase 2C

HMMSmart IPR001932 14 419 SM00332 Protein phosphatase 2C-related

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR014045	24	400	PF00481	Protein phosphatase 2C
HMMSmart	IPR001932	14	419	SM00332	Protein phosphatase 2C-related

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 179 ISGGCTALIVICLLGKLYVANAG 201 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	179	ISGGCTALIVICLLGKLYVANAG	201	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTAGAACAAACTCAGTCCGTC

Primer_r
: CAAGAACAGCAGATAGGTATG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 12

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	4504 bp
Genome contig ID	gi89161190r_61224066
PolyA signal sequence (None)	+--------+--------+----*----+---- AAATATTATATATATGTATATACGACATATTCAGC
Flanking genome sequence (99967 - 99918)	----+--------+--------+--------+--------+----* AAAACTTTTTTCTGTCTTTTCTATGAATTCACTGTGAAGTTTCTTTGTAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	12	r	61324033	61512313	9	99.2	Perfect prediction

Primer_f	: TTAGAACAAACTCAGTCCGTC
Primer_r	: CAAGAACAGCAGATAGGTATG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1157

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information