HUGE

Gene/Protein Characteristic Table for KIAA1046

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK06248
Accession No. :	AB028969
Description :	OTU domain-containing protein 4.
HUGO Gene Name :	OTU domain containing 4 (OTUD4)
Clone Name :	hh00940 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5577 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3794 bp

Genome contig ID gi89161207r_146174253
PolyA signal sequence
(ATTAAA,-18)
+----*----+----*----+----*----+----
TAAAACTGTGTGCATATATTAAATTTTGTCTCTTG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATTCTGCTTGTGATTCTTTGGTTCCAGGGTTAACCAGGTAATATAGCATG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 4 r 146274253 146279814 2 99.5 Internal No-hit

Features of the protein sequence	Description

Length: 427 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
AAH57242	1.3e-156	97.2	OTUD4 protein [...	Homo sapiens
ABD72605	2.2e-156	97.2	OTUD4: OTU doma...	Homo sapiens
AAI18573	2.2e-156	97.2	OTU domain cont...	Homo sapiens
Q01804	2.3e-156	97.2	OTU domain-cont...	Homo sapiens
XP_001095354	4.9e-155	96.0	similar to OTU ...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 4 KPLFFLLFCLFNCFLSLQAYS 24 PRIMARY 21

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	4	KPLFFLLFCLFNCFLSLQAYS	24	PRIMARY	21

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: ATGGCAGACCTAAGCTCAGAC

Primer_r
: TGCACCAAGTCAATCATAAGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 12

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: ATGGCAGACCTAAGCTCAGAC
Primer_r	: TGCACCAAGTCAATCATAAGC
PCR product length	: 180 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3794 bp
Genome contig ID	gi89161207r_146174253
PolyA signal sequence (ATTAAA,-18)	+--------+--------+----*----+---- TAAAACTGTGTGCATATATTAAATTTTGTCTCTTG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATTCTGCTTGTGATTCTTTGGTTCCAGGGTTAACCAGGTAATATAGCATG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	4	r	146274253	146279814	2	99.5	Internal No-hit

Gene/Protein Characteristic Table for KIAA1046

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information