HUGE

Gene/Protein Characteristic Table for KIAA0958

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00697
Accession No. :	AB023175
Description :	GDP-fucose protein O-fucosyltransferase 2 precursor.
HUGO Gene Name :	protein O-fucosyltransferase 2 (POFUT2)
Clone Name :	hj05707 [Vector Info]
Flexi ORF Clone :	pF1KSDA0958
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4804 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3515 bp

Genome contig ID gi51511750r_45408280
PolyA signal sequence
(AATAAA,-17)
+----*----+----*----+----*----+----
ACCTTCCTTTTTAAGAAAAATAAACTGCTTTATGG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAGTTGGTAGCTGTGGAGTGTAGACTCATTAGACTCATTTCCTGCCACAC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 21 r 45508280 45532228 8 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 428 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
CAC24557	1.7e-190	100.0	C21orf80 protei...	Homo sapiens
T14795	6.2e-170	100.0	5c02f12-t7 memb...	Zea mays
Q9Y2G5	4.4e-169	98.2	GDP-fucose prot...	Homo sapiens
EAX09353	7.8e-169	100.0	protein O-fucos...	Homo sapiens
EAX09351	8e-169	100.0	protein O-fucos...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 5 MATLSFVFLLLGAVSWPP 22 PRIMARY 18

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	5	MATLSFVFLLLGAVSWPP	22	PRIMARY	18

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CAGGGTCCTATGGTGTTACTC

Primer_r
: CAACTGATGAAAAAGGCACTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 21

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CAGGGTCCTATGGTGTTACTC
Primer_r	: CAACTGATGAAAAAGGCACTG
PCR product length	: 98 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3515 bp
Genome contig ID	gi51511750r_45408280
PolyA signal sequence (AATAAA,-17)	+--------+--------+----*----+---- ACCTTCCTTTTTAAGAAAAATAAACTGCTTTATGG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAGTTGGTAGCTGTGGAGTGTAGACTCATTAGACTCATTTCCTGCCACAC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	21	r	45508280	45532228	8	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0958

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information