HUGE

Gene/Protein Characteristic Table for KIAA0877

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00140
Accession No. :	AB020684
Description :	dpy-19-like 1.
HUGO Gene Name :	dpy-19-like 1 (C. elegans) (DPY19L1)
Clone Name :	hk07357 [Vector Info]
Flexi ORF Clone :	pF1KA0877
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4436 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2692 bp

Genome contig ID gi89161213r_34835039
PolyA signal sequence
(ATTAAA,-23)
+----*----+----*----+----*----+----
TATATATGTTAAATTAAAAAAAATCATGAGAAATG
Flanking genome sequence
(99980 - 99931)
----+----*----+----*----+----*----+----*----+----*
AGGGAAGTGTTTTTCTTGATTGTTATTTTCATTTTCACCTTGATTGTGAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 7 r 34935019 35019750 19 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 580 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAW94039	100.0	hCG1645499, iso...	Homo sapiens
Q2PZI1	100.0	Protein dpy-19 ...	Homo sapiens
XP_001169037	99.8	dpy-19-like 1 i...	Pan troglodytes
XP_001169062	99.8	dpy-19-like 1 i...	Pan troglodytes
XP_001500017	97.4	similar to Prot...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 10 FNLYPEVILASWYRIYTKIMDLI 32 SECONDARY 23

2 58 GDPACFYVAVIFILNGLMMALFF 80 PRIMARY 23

3 119 SFSYPFLVLQMLLVTHILRATKL 141 SECONDARY 23

4 155 FFMLPWQFAQFVLLTQIASLFAV 177 PRIMARY 23

5 191 IIYIHMISLALCFVLMFGNSMLL 213 PRIMARY 23

6 216 YYASSLVIIWGILAMKPHFLKIN 238 PRIMARY 23

7 240 SELSLWVIQGCFWLFGTVILKYL 262 PRIMARY 23

8 314 TLLLPVVLVVFVAIVRKIISDMW 336 PRIMARY 23

9 363 LLAYTALGILIMRLKLFLTPHMC 385 PRIMARY 23

10 400 LFCKVHPGAIVFAILAAMSIQGS 422 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	10	FNLYPEVILASWYRIYTKIMDLI	32	SECONDARY	23
2	58	GDPACFYVAVIFILNGLMMALFF	80	PRIMARY	23
3	119	SFSYPFLVLQMLLVTHILRATKL	141	SECONDARY	23
4	155	FFMLPWQFAQFVLLTQIASLFAV	177	PRIMARY	23
5	191	IIYIHMISLALCFVLMFGNSMLL	213	PRIMARY	23
6	216	YYASSLVIIWGILAMKPHFLKIN	238	PRIMARY	23
7	240	SELSLWVIQGCFWLFGTVILKYL	262	PRIMARY	23
8	314	TLLLPVVLVVFVAIVRKIISDMW	336	PRIMARY	23
9	363	LLAYTALGILIMRLKLFLTPHMC	385	PRIMARY	23
10	400	LFCKVHPGAIVFAILAAMSIQGS	422	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TAGCAGGTTCCATAGGCGTAC

Primer_r
: CTTTGCCCATCCTTACTTTCC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 7

Experimental conditions

Panel name	: UniGene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2692 bp
Genome contig ID	gi89161213r_34835039
PolyA signal sequence (ATTAAA,-23)	+--------+--------+----*----+---- TATATATGTTAAATTAAAAAAAATCATGAGAAATG
Flanking genome sequence (99980 - 99931)	----+--------+--------+--------+--------+----* AGGGAAGTGTTTTTCTTGATTGTTATTTTCATTTTCACCTTGATTGTGAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	7	r	34935019	35019750	19	99.4	Perfect prediction

Primer_f	: TAGCAGGTTCCATAGGCGTAC
Primer_r	: CTTTGCCCATCCTTACTTTCC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA0877

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information