HUGE

Gene/Protein Characteristic Table for KIAA0792

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00640
Accession No. :	AB018335
Description :	Transmembrane protein 63A.
HUGO Gene Name :
Clone Name :	hk05691 [Vector Info]
Flexi ORF Clone :	pF1KSDA0792
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4074 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1400 bp

Genome contig ID gi89161185r_223999863
PolyA signal sequence
(AGTAAA,-19)
+----*----+----*----+----*----+----
TTCCAGCCGCTTTTAGAGTAAAGTCGTTTATCATC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAGCCATGTTGCTTACCACACGGAGTTGGGGGTTGGGGAGTGAGCTTGG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 r 224099863 224136671 25 99.6 Perfect prediction

Features of the protein sequence	Description

Length: 828 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAG09849	100.0	transmembrane p...	synthetic construct
O94886	99.9	Transmembrane p...	Homo sapiens
BAG51078	99.4	unnamed protein...	Homo sapiens
Q5R826	98.6	Transmembrane p...	Pongo abelii
XP_001089796	96.0	similar to tran...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB007958	6.2e-42	100.0	KIAA0489

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR003864 356 790 PF02714 Protein of unknown function DUF221

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003864	356	790	PF02714	Protein of unknown function DUF221

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 67 TFGGIPTVLLIDVSCFLFLILVF 89 PRIMARY 23

2 166 HIIFLLVVVSFLSLCVILPVNLS 188 PRIMARY 23

3 212 DLLWLHTIFAVIYLFFTVGFMRH 234 PRIMARY 23

4 446 INFTLFLGLFFLTTPSIILSTMD 468 SECONDARY 23

5 487 FFPTLLLWSFSALLPSIVYYSTL 509 PRIMARY 23

6 528 YIFLIFMVLILPSLGLTSLDFFF 550 PRIMARY 23

7 583 ASAFIGNGMELLRLPGLILYTFR 605 SECONDARY 23

8 635 MLCVFTVIVAYSITCPIIAPFGL 657 PRIMARY 23

9 689 VNQALAAPILCLFWLYFFSFLRL 711 PRIMARY 23

10 717 ATLFTFLVLLLTILVCLAHTCFG 739 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	67	TFGGIPTVLLIDVSCFLFLILVF	89	PRIMARY	23
2	166	HIIFLLVVVSFLSLCVILPVNLS	188	PRIMARY	23
3	212	DLLWLHTIFAVIYLFFTVGFMRH	234	PRIMARY	23
4	446	INFTLFLGLFFLTTPSIILSTMD	468	SECONDARY	23
5	487	FFPTLLLWSFSALLPSIVYYSTL	509	PRIMARY	23
6	528	YIFLIFMVLILPSLGLTSLDFFF	550	PRIMARY	23
7	583	ASAFIGNGMELLRLPGLILYTFR	605	SECONDARY	23
8	635	MLCVFTVIVAYSITCPIIAPFGL	657	PRIMARY	23
9	689	VNQALAAPILCLFWLYFFSFLRL	711	PRIMARY	23
10	717	ATLFTFLVLLLTILVCLAHTCFG	739	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CAGCCTCTCTCACCTCTTCAG

Primer_r
: ATGCTGTCCTTTGGCTCCGAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CAGCCTCTCTCACCTCTTCAG
Primer_r	: ATGCTGTCCTTTGGCTCCGAG
PCR product length	: 144 bp
PCR conditions	: 95 °C15 sec68 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1400 bp
Genome contig ID	gi89161185r_223999863
PolyA signal sequence (AGTAAA,-19)	+--------+--------+----*----+---- TTCCAGCCGCTTTTAGAGTAAAGTCGTTTATCATC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAGCCATGTTGCTTACCACACGGAGTTGGGGGTTGGGGAGTGAGCTTGG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	r	224099863	224136671	25	99.6	Perfect prediction

Gene/Protein Characteristic Table for KIAA0792

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information