HUGE

Gene/Protein Characteristic Table for KIAA0767

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK01993
Accession No. :	AB018310
Description :	death-inducing-protein.
HUGO Gene Name :	GRAM domain containing 4 (GRAMD4)
Clone Name :	aj00389 [Vector Info]
Flexi ORF Clone :	pF1KA0767
Source :	Human brain (amygdala)
Note :	We replaced hk04874, former representative clones for KIAA0767 with aj00389. (2005/08/06)

Features of the cloned DNA sequence	Description

Length: 4481 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2531 bp

Genome contig ID gi89161203f_45294963
PolyA signal sequence
(AATAAA,-24)
+----*----+----*----+----*----+----
ATTTTTATTTAAATAAACCTAAAATGCTTTGTGCT
Flanking genome sequence
(159383 - 159432)
----+----*----+----*----+----*----+----*----+----*
AAGGCTCAGGGCTGTCTGCCTCCTTGGCAGGGCCACACGCATTGTAGGCG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 22 f 45394963 45454344 19 99.3 Perfect prediction

Features of the protein sequence	Description

Length: 598 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q6IC98	0	100.0	GRAM domain-con...	Homo sapiens
Q8CB44	0	93.0	GRAM domain-con...	Mus musculus
XP_001078454	0	93.3	similar to deat...	Rattus norvegicus
XP_235571	7.7e-217	93.3	similar to deat...	Rattus norvegicus
XP_001489246	8.6e-213	94.1	GRAM domain con...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR004182 465 543 PF02893 GRAM

HMMSmart IPR004182 465 543 SM00568 GRAM

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004182	465	543	PF02893	GRAM
HMMSmart	IPR004182	465	543	SM00568	GRAM

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 272 PLFLFLAILRLSLNYLIARGWRI 294 PRIMARY 23

2 348 MWVQPEITQKLYVALWAAFLASC 370 SECONDARY 23

3 375 RLVGLAVGLYAGIKFFLIDFIF 396 SECONDARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	272	PLFLFLAILRLSLNYLIARGWRI	294	PRIMARY	23
2	348	MWVQPEITQKLYVALWAAFLASC	370	SECONDARY	23
3	375	RLVGLAVGLYAGIKFFLIDFIF	396	SECONDARY	22

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GACAATGGCCACACCTCTCTC

Primer_r
: AGGGACTCGAACTAAACCACC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 22

Experimental conditions

Panel name	: UniGene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2531 bp
Genome contig ID	gi89161203f_45294963
PolyA signal sequence (AATAAA,-24)	+--------+--------+----*----+---- ATTTTTATTTAAATAAACCTAAAATGCTTTGTGCT
Flanking genome sequence (159383 - 159432)	----+--------+--------+--------+--------+----* AAGGCTCAGGGCTGTCTGCCTCCTTGGCAGGGCCACACGCATTGTAGGCG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	22	f	45394963	45454344	19	99.3	Perfect prediction

Primer_f	: GACAATGGCCACACCTCTCTC
Primer_r	: AGGGACTCGAACTAAACCACC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA0767

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information