HUGE

Gene/Protein Characteristic Table for KIAA0766

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00127
Accession No. :	AB018309
Description :	EPM2A (laforin) interacting protein 1 (EPM2AIP1), mRNA.
HUGO Gene Name :	EPM2A (laforin) interacting protein 1 (EPM2AIP1)
Clone Name :	hk04860 [Vector Info]
Flexi ORF Clone :	pF1KA0766
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4185 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2245 bp

Genome contig ID gi89161205r_36905502
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CTATAGAGAATTTGCTATAAGCTAGTCTTGTTTGT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAAGTGTATTTTACTGTTTTC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 3 r 37005502 37009688 1 99.0 Perfect prediction

Features of the protein sequence	Description

Length: 640 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q7L775	100.0	EPM2A-interacti...	Homo sapiens
XP_526480	99.5	hypothetical pr...	Pan troglodytes
CAH91011	99.2	hypothetical pr...	Pongo abelii
XP_001090676	97.5	EPM2A interacti...	Macaca mulatta
XP_851144	91.1	similar to EPM2...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB067512	8.8e-19	23.5	KIAA1925
AB037774	1.5e-18	22.0	KIAA1353

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTATCAAGAATGGTCAAGCTG

Primer_r
: CTCTCAAGTAATAAAGCTCTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 3

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TTATCAAGAATGGTCAAGCTG
Primer_r	: CTCTCAAGTAATAAAGCTCTG
PCR product length	: 157 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2245 bp
Genome contig ID	gi89161205r_36905502
PolyA signal sequence (None)	+--------+--------+----*----+---- CTATAGAGAATTTGCTATAAGCTAGTCTTGTTTGT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAAGTGTATTTTACTGTTTTC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	3	r	37005502	37009688	1	99.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA0766

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information