HUGE

Gene/Protein Characteristic Table for KIAA0626

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00579
Accession No. :	AB014526
Description :	Microfibrillar-associated protein 3-like precursor.
HUGO Gene Name :	microfibrillar-associated protein 3-like (MFAP3L)
Clone Name :	hh00753 [Vector Info]
Flexi ORF Clone :	pF1KSDA0626
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 6184 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4776 bp

Genome contig ID gi89161207r_171044328
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
GATTGATGCTTTAATAAAGGGTTTGCACAGCTGTG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
TGGAATGTGTGTTGTGTCCCACCTGAAGGGTGTGTAACTGTGGCTTGACT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 4 r 171144328 171184004 3 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 433 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
O75121	4e-156	100.0	Microfibrillar-...	Homo sapiens
XP_001154389	8.2e-156	99.8	microfibrillar-...	Pan troglodytes
AAS55434	9.4e-156	99.8	HSD-39 [Homo sa...	Homo sapiens
XP_001084068	1.5e-155	99.8	microfibrillar-...	Macaca mulatta
XP_534551	1.7e-147	90.3	similar to Micr...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR013098 71 166 PF07679 Immunoglobulin I-set

HMMSmart IPR003599 77 167 SM00409 Immunoglobulin subtype

IPR003598 83 156 SM00408 Immunoglobulin subtype 2

ProfileScan IPR007110 71 165 PS50835 Immunoglobulin-like

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR013098	71	166	PF07679	Immunoglobulin I-set
HMMSmart	IPR003599	77	167	SM00409	Immunoglobulin subtype
IPR003598	83	156	SM00408	Immunoglobulin subtype 2
ProfileScan	IPR007110	71	165	PS50835	Immunoglobulin-like

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 29 KSHLTVCFLPSVPFLILVSTLAT 51 PRIMARY 23

2 59 TLNGTNVVLGSVPVIIARTDHII 81 SECONDARY 23

3 177 YMVVCLVAFTIVMVLNITRLCMM 199 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	29	KSHLTVCFLPSVPFLILVSTLAT	51	PRIMARY	23
2	59	TLNGTNVVLGSVPVIIARTDHII	81	SECONDARY	23
3	177	YMVVCLVAFTIVMVLNITRLCMM	199	PRIMARY	23

Expression profile	Description

: RT-PCR Description
: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TAGAAAGGCAAACCAGATACC

Primer_r
: ACTCAATGCCAAAAGGGTACG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 4

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TAGAAAGGCAAACCAGATACC
Primer_r	: ACTCAATGCCAAAAGGGTACG
PCR product length	: 229 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	4776 bp
Genome contig ID	gi89161207r_171044328
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- GATTGATGCTTTAATAAAGGGTTTGCACAGCTGTG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* TGGAATGTGTGTTGTGTCCCACCTGAAGGGTGTGTAACTGTGGCTTGACT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	4	r	171144328	171184004	3	100.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA0626

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information