HUGE

Gene/Protein Characteristic Table for KIAA0455

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Mapping

Product ID :	ORK00080
Accession No. :	AB007924
Description :	plasticity related gene 1.
HUGO Gene Name :
Clone Name :	fh02485 [Vector Info]
Flexi ORF Clone :	pF1KA0455
Source :	Human fetal brain
Note :	We replaced hg00513, former representative clones for KIAA0455 with fh02485. (2005/08/06)

Features of the cloned DNA sequence	Description

Length: 5014 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2568 bp

Genome contig ID gi89161185f_99402440
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
TAAAATCATAGAAATAAAGATTAGATTTCTTCATC
Flanking genome sequence
(145286 - 145335)
----+----*----+----*----+----*----+----*----+----*
AAAATTGGAATAGTTTGGTTTTTACTTCAGAGTCTGAATAGATAATAGCT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 f 99502440 99547724 7 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 814 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q7Z2D5	100.0	Lipid phosphate...	Homo sapiens
XP_001489501	98.2	similar to plas...	Equus caballus
AAH42963	99.6	LPPR4 protein [...	Homo sapiens
ACD76642	95.5	plasticity rela...	Felis catus
Q7TME0	95.7	Lipid phosphate...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000326 229 382 PF01569 Phosphoesterase

HMMSmart IPR000326 230 374 SM00014 Phosphoesterase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000326	229	382	PF01569	Phosphoesterase
HMMSmart	IPR000326	230	374	SM00014	Phosphoesterase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 116 TLLPCFYFVELPILASSVVSLYF 138 PRIMARY 23

2 173 FLMLLSLAFAGPAITIMVGEGIL 195 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	116	TLLPCFYFVELPILASSVVSLYF	138	PRIMARY	23
2	173	FLMLLSLAFAGPAITIMVGEGIL	195	PRIMARY	23

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: ATCAGTAAAGCACAGCCTAAC
Primer_r	: AGGTGGTATCTCTTCTTAGTG
PCR product length	: 83 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2568 bp
Genome contig ID	gi89161185f_99402440
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- TAAAATCATAGAAATAAAGATTAGATTTCTTCATC
Flanking genome sequence (145286 - 145335)	----+--------+--------+--------+--------+----* AAAATTGGAATAGTTTGGTTTTTACTTCAGAGTCTGAATAGATAATAGCT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	f	99502440	99547724	7	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0455

Features of the cloned DNA sequence

Features of the protein sequence

RH mapping information