HUGE

Gene/Protein Characteristic Table for KIAA0447

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Mapping

Product ID :	ORK00079
Accession No. :	AB007916
Description :	SLC35E2 protein.
HUGO Gene Name :	solute carrier family 35, member E2 (SLC35E2)
Clone Name :	fh17910 [Vector Info]
Flexi ORF Clone :	pF1KA0447
Source :	Human fetal brain
Note :	We replaced hg00132, former representative clones for KIAA0447 with fh17910. (2005/08/06)

Features of the cloned DNA sequence	Description

Length: 5272 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 3613 bp

Genome contig ID gi89161185r_1482803
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
ATGTTAAATATGGAAAAAAAAAAAAAAAAAAAAAC
Flanking genome sequence
(165882 - 165833)
----+----*----+----*----+----*----+----*----+----*
ACTGCTTTGTTTTCTTCCTTGTGGACCTCTGGTGTTCATGCTACTTTGTT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 r 1509475 1614041 11 98.7 Terminal No-hit

ContigView(URL based/DAS) 1 r 1640910 1667316 8 98.5 Internal No-hit

Features of the protein sequence	Description

Length: 466 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_001717787	2.1e-189	99.8	similar to solu...	Homo sapiens
Q5CZA4	2.9e-159	99.8	Solute carrier ...	Homo sapiens
BAG54222	6.1e-159	99.8	unnamed protein...	Homo sapiens
Q8C811	6.5e-140	86.1	Solute carrier ...	Mus musculus
XP_546710	2.5e-139	86.9	similar to solu...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR002110 84 96 PR01415 Ankyrin

IPR002110 354 366 PR01415 Ankyrin

HMMPfam IPR004853 285 430 PF03151 Protein of unknown function DUF250

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR002110	84	96	PR01415	Ankyrin
IPR002110	354	366	PR01415	Ankyrin
HMMPfam	IPR004853	285	430	PF03151	Protein of unknown function DUF250

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 138 LYLTLWFFFSFCTLFLNKYILSL 160 PRIMARY 23

2 169 GAVQMLSTTVIGCVKTLVPCCLY 191 SECONDARY 23

3 205 MTMLFVGLMRFATVVLGLVSLKN 227 SECONDARY 23

4 259 LVNLSLIPVMGGLALCTATEISF 281 SECONDARY 23

5 353 YNQDVVLLLLTDGVLFHLQSITA 375 SECONDARY 23

6 401 LSVIVFGNKITSLSAVGTALVTV 423 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	138	LYLTLWFFFSFCTLFLNKYILSL	160	PRIMARY	23
2	169	GAVQMLSTTVIGCVKTLVPCCLY	191	SECONDARY	23
3	205	MTMLFVGLMRFATVVLGLVSLKN	227	SECONDARY	23
4	259	LVNLSLIPVMGGLALCTATEISF	281	SECONDARY	23
5	353	YNQDVVLLLLTDGVLFHLQSITA	375	SECONDARY	23
6	401	LSVIVFGNKITSLSAVGTALVTV	423	PRIMARY	23

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: ACTTACCACCACAGCAGAATC
Primer_r	: GTTTTGCATGTGACCTATTTC
PCR product length	: 106 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	YES

Length of 3'UTR	3613 bp
Genome contig ID	gi89161185r_1482803
PolyA signal sequence (None)	+--------+--------+----*----+---- ATGTTAAATATGGAAAAAAAAAAAAAAAAAAAAAC
Flanking genome sequence (165882 - 165833)	----+--------+--------+--------+--------+----* ACTGCTTTGTTTTCTTCCTTGTGGACCTCTGGTGTTCATGCTACTTTGTT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	r	1509475	1614041	11	98.7	Terminal No-hit
ContigView(URL based/DAS)	1	r	1640910	1667316	8	98.5	Internal No-hit

Gene/Protein Characteristic Table for KIAA0447

Features of the cloned DNA sequence

Features of the protein sequence

RH mapping information