HUGE

Gene/Protein Characteristic Table for KIAA0423

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05600
Accession No. :	AB007883
Description :
HUGO Gene Name :
Clone Name :	hh01239s1 [Vector Info]
Source :	Human adult brain
Note :	We replaced hh01239, former representative clones for KIAA0423 with hh01239s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 6246 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 869 bp

Genome contig ID gi51511730f_44401161
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
AAGGAATGTTATAAAATAAAAGGATTTATTTCTTT
Flanking genome sequence
(212224 - 212273)
----+----*----+----*----+----*----+----*----+----*
AGATGTGTGAGAGGTGTCCTGTTTTTCCAACTTCCATACATGTTAAAATG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 14 f 44501161 44613383 19 99.6 Perfect prediction

Features of the protein sequence	Description

Length: 1723 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q9Y4F4	99.9	Protein FAM179B.	Homo sapiens
XP_001150036	99.1	hypothetical pr...	Pan troglodytes
XP_001095589	97.3	similar to B002...	Macaca mulatta
XP_001076246	87.2	similar to B002...	Rattus norvegicus
XP_509925	96.1	hypothetical pr...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: AGACCTGGCACTATTTTTGAG

Primer_r
: AACCCCCCTATTTTTGTGTGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 14

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: AGACCTGGCACTATTTTTGAG
Primer_r	: AACCCCCCTATTTTTGTGTGC
PCR product length	: 106 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	869 bp
Genome contig ID	gi51511730f_44401161
PolyA signal sequence (AATAAA,-21)	+--------+--------+----*----+---- AAGGAATGTTATAAAATAAAAGGATTTATTTCTTT
Flanking genome sequence (212224 - 212273)	----+--------+--------+--------+--------+----* AGATGTGTGAGAGGTGTCCTGTTTTTCCAACTTCCATACATGTTAAAATG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	14	f	44501161	44613383	19	99.6	Perfect prediction

Gene/Protein Characteristic Table for KIAA0423

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information