HUGE

Gene/Protein Characteristic Table for KIAA0374

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK01972
Accession No. :	AB002372
Description :	Syntaphilin.
HUGO Gene Name :
Clone Name :	hh00327 [Vector Info]
Flexi ORF Clone :	pF1KA0374
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5530 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3271 bp

Genome contig ID gi51511747f_1094999
PolyA signal sequence
(ATTAAA,-21)
+----*----+----*----+----*----+----
GCAGACAACTCTGAATTAAAGCATGAAAACACAGC
Flanking genome sequence
(142972 - 143021)
----+----*----+----*----+----*----+----*----+----*
AAGCCCCTTGGCCTGTTTTCTTTATACTGGGTGGTTTCTCTAAGGGGAGG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 20 f 1194999 1237969 7 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 584 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
O15079	3e-177	100.0	Syntaphilin.	Homo sapiens
XP_001153223	9.8e-177	99.8	syntaphilin iso...	Pan troglodytes
XP_001112820	2e-174	98.5	syntaphilin [Ma...	Macaca mulatta
XP_001497716	1.6e-163	93.7	similar to Synt...	Equus caballus
AAH35788	7.7e-161	100.0	Syntaphilin [Ho...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB040905	1.8e-23	41.8	KIAA1472

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 10 WVVGTCAPALFNSLVEAAVVCQA 32 PRIMARY 23

2 514 HYIVDLLAVVVPAVPTVAWLCR 535 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	10	WVVGTCAPALFNSLVEAAVVCQA	32	PRIMARY	23
2	514	HYIVDLLAVVVPAVPTVAWLCR	535	PRIMARY	22

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: GGATGGCCTAATATGGGAATG

Primer_r
: TCTTACAGCACTTTGGGGAGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 20

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: GGATGGCCTAATATGGGAATG
Primer_r	: TCTTACAGCACTTTGGGGAGG
PCR product length	: 151 bp
PCR conditions	: 95 °C15 sec64 °C60 sec32 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3271 bp
Genome contig ID	gi51511747f_1094999
PolyA signal sequence (ATTAAA,-21)	+--------+--------+----*----+---- GCAGACAACTCTGAATTAAAGCATGAAAACACAGC
Flanking genome sequence (142972 - 143021)	----+--------+--------+--------+--------+----* AAGCCCCTTGGCCTGTTTTCTTTATACTGGGTGGTTTCTCTAAGGGGAGG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	20	f	1194999	1237969	7	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0374

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information