HUGE |
Gene/Protein Characteristic Table for KIAA0348 |
Link to :
Rouge |
GTOP | SWISS-PROT/TrEMBL | GeneCards| RefDIC | |
Features : DNA sequence | Protein sequence | Expression | Mapping | |
Product ID : | |
---|---|
Accession No. : | AB002346 |
Description : | Synaptojanin-2. |
HUGO Gene Name : | |
Clone Name : | hg01551 [Vector Info] |
Flexi ORF Clone : | pF1KA0348
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Source : | Human adult brain |
Features of the cloned DNA sequence |
Description | |
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Length: 6562 bp
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The cloned DNA sequence was revised by direct RT-PCR/sequencing experiments following the alert of coding interruption by GeneMark analysis.
cloned DNA seq. | ||
Warning for N-terminal truncation: | YES | YES |
Warning for coding interruption: | YES | NO |
Length of 3'UTR 2172 bp Genome contig ID gi89161210f_158258255 PolyA signal sequence
(None) +----*----+----*----+----*----+----
GGTAGTAGGTATGGTTCTCATACCAGAATTCTCTTFlanking genome sequence
(181303 - 181352) ----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAGGACAATTGGAATTGCCTTATTTATTTTTAAAATCA
Chr f/r start end exon identity class ContigView(URL based/DAS) 6 f 158358255 158439556 26 100.0 Perfect prediction
Features of the protein sequence |
Description | |
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Length: 1443 aa
This protein sequence is predicted from the revised DNA sequence
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Search method | interpro_ID | From | To | Entry | Definition |
---|---|---|---|---|---|
HMMPfam | IPR002013 | 7 | 296 | PF02383 | Synaptojanin |
IPR005135 | 479 | 809 | PF03372 | Endonuclease/exonuclease/phosphatase | |
IPR015047 | 810 | 955 | PF08952 | Domain of unknown function DUF1866 | |
HMMSmart | IPR000300 | 475 | 817 | SM00128 | Inositol polyphosphate related phosphatase |
ProfileScan | IPR002013 | 67 | 391 | PS50275 | Synaptojanin |
IPR000504 | 836 | 915 | PS50102 | RNA recognition motif |
Method | No. | N terminal | transmembrane region | C terminal | type | length |
---|---|---|---|---|---|---|
SOSUI2 | 1 | 17 | KSGGTSLSFLVLVTGCTSVGRIP | 39 | SECONDARY | 23 |
2 | 567 | RYILLTSAQLVGVCLYIFVRPYH | 589 | PRIMARY | 23 |
Expression profile |
Description | |
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RT-PCR | Description |
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: CCTACTACCAACTCCAAATCC | |
: TAGGTTTTCTCTTCGTTCCAG | |
: 95 °C |
RH mapping information |
Description | |
---|---|---|
: 6 |
: GeneBridge 4 | |
: CCTACTACCAACTCCAAATCC | |
: TAGGTTTTCTCTTCGTTCCAG | |
: 243 bp | |
: 95 °C |
How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage ![]() | |