HUGE

Gene/Protein Characteristic Table for KIAA0289

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Mapping

Product ID :	ORK00497
Accession No. :	AB006627
Description :	Astrotactin-1 precursor.
HUGO Gene Name :
Clone Name :	ha06244 [Vector Info]
Flexi ORF Clone :	pF1KSDA0289
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 7127 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3216 bp

Genome contig ID gi89161185r_174996827
PolyA signal sequence
(AATAAA,-24)
+----*----+----*----+----*----+----
ATTAACTGAATAATAAAACAAAGCTATTAGTAAGC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATTGGGTATGTGGATGTTGTGTCTTTCAGTAATCTGAGTGAACTGGTTAG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 r 175096827 175400449 23 99.4 Terminal No-hit

Features of the protein sequence	Description

Length: 1302 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_514021	99.9	astrotactin [Pa...	Pan troglodytes
EAW91006	100.0	astrotactin, is...	Homo sapiens
XP_001105186	99.9	similar to astr...	Macaca mulatta
CAH71678	99.8	astrotactin 1 [...	Homo sapiens
EAW91005	99.4	astrotactin, is...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB014534	1.5e-203	48.9	KIAA0634

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMSmart IPR006210 470 507 SM00181 EGF

IPR006210 611 652 SM00181 EGF

IPR006210 659 708 SM00181 EGF

IPR001862 811 999 SM00457 Membrane attack complex component/perforin/complement C9

ProfileScan IPR003961 1030 1151 PS50853 Fibronectin

Search method	interpro_ID	From	To	Entry	Definition
HMMSmart	IPR006210	470	507	SM00181	EGF
IPR006210	611	652	SM00181	EGF
IPR006210	659	708	SM00181	EGF
IPR001862	811	999	SM00457	Membrane attack complex component/perforin/complement C9
ProfileScan	IPR003961	1030	1151	PS50853	Fibronectin

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 9 MALAGLCALLACCWGPAAVLATA 31 PRIMARY 23

2 160 LHISVMGGMIALLLSILCLVMIL 182 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	9	MALAGLCALLACCWGPAAVLATA	31	PRIMARY	23
2	160	LHISVMGGMIALLLSILCLVMIL	182	PRIMARY	23

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: CTATGACTGGCTCCTACTTAC
Primer_r	: GTACCATCACCCTTTCTAGCC
PCR product length	: 189 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3216 bp
Genome contig ID	gi89161185r_174996827
PolyA signal sequence (AATAAA,-24)	+--------+--------+----*----+---- ATTAACTGAATAATAAAACAAAGCTATTAGTAAGC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATTGGGTATGTGGATGTTGTGTCTTTCAGTAATCTGAGTGAACTGGTTAG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	r	175096827	175400449	23	99.4	Terminal No-hit

Gene/Protein Characteristic Table for KIAA0289

Features of the cloned DNA sequence

Features of the protein sequence

RH mapping information