HUGE

Gene/Protein Characteristic Table for KIAA0286

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Mapping

Product ID :	ORK00495
Accession No. :	AB006624
Description :
HUGO Gene Name :	transmembrane protein 194A (TMEM194A)
Clone Name :	ha06800s1 [Vector Info]
Flexi ORF Clone :	pF1KSDA0286
Source :	Human adult brain
Note :	We replaced ha06800, former representative clones for KIAA0286 with ha06800s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 5577 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4235 bp

Genome contig ID gi89161190r_55635694
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
TTTCTAATTCCAATTTTAATAAAAGTTTTATAGAT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATATTGTGGTCTTTCTTAATGAACATAATATTTTCTTGTTTGGATTTCTT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 12 r 55735694 55758802 9 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 446 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
AAH71597	2.6e-189	100.0	TMEM194A protei...	Homo sapiens
Q5RDB4	5.4e-185	98.0	Transmembrane p...	Pongo abelii
XP_001099369	5.7e-183	97.1	hypothetical pr...	Macaca mulatta
A7MBC7	1.3e-161	85.4	Transmembrane p...	Bos taurus
EDM16455	1.7e-154	83.1	rCG59551 [Rattu...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1 ATMAGGMKVAVSPAVGPGPWGSG 23 SECONDARY 23

2 28 GTVRLLLILSGCLVYGTAETDVN 50 SECONDARY 23

3 161 FDPKLFLVFLLGLMLFFCGDLLS 183 PRIMARY 23

4 192 TGMTVGIVASLLIIIFILSKFMP 214 PRIMARY 23

5 220 YVILVGGWSFSLYLIQLVFKNLQ 242 PRIMARY 23

6 250 QYLLSYVLTVGFMSFAVCYKYG 271 PRIMARY 22

7 287 QLMGLCFMYSGIQIPHIALAIII 309 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1	ATMAGGMKVAVSPAVGPGPWGSG	23	SECONDARY	23
2	28	GTVRLLLILSGCLVYGTAETDVN	50	SECONDARY	23
3	161	FDPKLFLVFLLGLMLFFCGDLLS	183	PRIMARY	23
4	192	TGMTVGIVASLLIIIFILSKFMP	214	PRIMARY	23
5	220	YVILVGGWSFSLYLIQLVFKNLQ	242	PRIMARY	23
6	250	QYLLSYVLTVGFMSFAVCYKYG	271	PRIMARY	22
7	287	QLMGLCFMYSGIQIPHIALAIII	309	PRIMARY	23

RH mapping information	Description

Chromosome No.

: 12

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: GATGTTGGTGCCTTATGTGAC
Primer_r	: ACTCCCATCTGCCACTAAAGC
PCR product length	: 99 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	4235 bp
Genome contig ID	gi89161190r_55635694
PolyA signal sequence (AATAAA,-18)	+--------+--------+----*----+---- TTTCTAATTCCAATTTTAATAAAAGTTTTATAGAT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATATTGTGGTCTTTCTTAATGAACATAATATTTTCTTGTTTGGATTTCTT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	12	r	55735694	55758802	9	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0286

Features of the cloned DNA sequence

Features of the protein sequence

RH mapping information