HUGE

Gene/Protein Characteristic Table for KIAA0195

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00451
Accession No. :	D83779
Description :
HUGO Gene Name :
Clone Name :	ha02752 [Vector Info]
Flexi ORF Clone :	pF1KSDA0195
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 5022 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 748 bp

Genome contig ID gi51511734f_70864331
PolyA signal sequence
(ATTAAA,-20)
+----*----+----*----+----*----+----
TGTAGACTGGTTTGTATTAAAATGTGTCAATTGCT
Flanking genome sequence
(143429 - 143478)
----+----*----+----*----+----*----+----*----+----*
AAGAAATACCTGTGGCTGGTCTGTAAGGCCACTCCAGGGTCTGCCCACCC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 17 f 70964331 71007758 32 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 1410 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_001096655	99.3	hypothetical pr...	Macaca mulatta
BAG57737	99.1	unnamed protein...	Homo sapiens
BAH14431	99.0	unnamed protein...	Homo sapiens
XP_001095555	98.6	hypothetical pr...	Macaca mulatta
EDL34520	95.3	RIKEN cDNA 2310...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR008250 223 247 PF00122 E1-E2 ATPase-associated region

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR008250	223	247	PF00122	E1-E2 ATPase-associated region

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 27 TGVCTCWGGAFLSGVTTFIWACL 49 SECONDARY 23

2 119 FHWPGASLMLLAVLLLLGCCGGQ 141 PRIMARY 23

3 147 GVGLVNASALFLLLLLNLVLIGR 169 PRIMARY 23

4 337 YAVPVVLAGFLITNALRFIFSAP 359 PRIMARY 23

5 372 QVNGVLPILPLLFPVLWVLATAC 394 PRIMARY 23

6 1146 CFLFLLQCQLTLVVIQFLSCLVQ 1168 PRIMARY 23

7 1175 TTDILWLSCFCYPLLSISLLGKP 1197 PRIMARY 23

8 1223 LLCFLLKFSLTISSCLICFGFTL 1245 SECONDARY 23

9 1287 QKLTAALIVLHTVFISITHVHR 1308 SECONDARY 22

10 1317 PLTNLWWAVTVPVVLLGQVVQTA 1339 PRIMARY 23

11 1359 VPLLTWLLGCLSLVLVVVTNEIV 1381 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	27	TGVCTCWGGAFLSGVTTFIWACL	49	SECONDARY	23
2	119	FHWPGASLMLLAVLLLLGCCGGQ	141	PRIMARY	23
3	147	GVGLVNASALFLLLLLNLVLIGR	169	PRIMARY	23
4	337	YAVPVVLAGFLITNALRFIFSAP	359	PRIMARY	23
5	372	QVNGVLPILPLLFPVLWVLATAC	394	PRIMARY	23
6	1146	CFLFLLQCQLTLVVIQFLSCLVQ	1168	PRIMARY	23
7	1175	TTDILWLSCFCYPLLSISLLGKP	1197	PRIMARY	23
8	1223	LLCFLLKFSLTISSCLICFGFTL	1245	SECONDARY	23
9	1287	QKLTAALIVLHTVFISITHVHR	1308	SECONDARY	22
10	1317	PLTNLWWAVTVPVVLLGQVVQTA	1339	PRIMARY	23
11	1359	VPLLTWLLGCLSLVLVVVTNEIV	1381	PRIMARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 17

Experimental conditions

Panel name	: Stanford G3
Primer_f	: GTCTCCCGCCTGAACCTGAAG
Primer_r	: AGATTCCCCAAGACTGACAGG
PCR product length	: 102 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	748 bp
Genome contig ID	gi51511734f_70864331
PolyA signal sequence (ATTAAA,-20)	+--------+--------+----*----+---- TGTAGACTGGTTTGTATTAAAATGTGTCAATTGCT
Flanking genome sequence (143429 - 143478)	----+--------+--------+--------+--------+----* AAGAAATACCTGTGGCTGGTCTGTAAGGCCACTCCAGGGTCTGCCCACCC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	17	f	70964331	71007758	32	99.9	Perfect prediction

Gene/Protein Characteristic Table for KIAA0195

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information