HUGE

Gene/Protein Characteristic Table for KIAA0180

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00446
Accession No. :	D80002
Description :	GDP-fucose protein O-fucosyltransferase 1 precursor.
HUGO Gene Name :	protein O-fucosyltransferase 1 (POFUT1)
Clone Name :	ha02567s1 [Vector Info]
Flexi ORF Clone :	pF1KSDA0180
Source :	Myeloblast cell line (KG-1)
Note :	We replaced ha02567, former representative clones for KIAA0180 with ha02567s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 5189 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3976 bp

Genome contig ID gi51511747f_30159360
PolyA signal sequence
(AATAAA,-9)
+----*----+----*----+----*----+----
TCAAATATAAATAAAAAATTGTGAGTAATAAAATG
Flanking genome sequence
(130743 - 130792)
----+----*----+----*----+----*----+----*----+----*
AACTCACAGTTTCAACAATGACCCACATTTTACCAGTCTAGTTGCATTGA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 20 f 30259360 30290101 7 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 403 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q9H488	3e-174	100.0	GDP-fucose prot...	Homo sapiens
BAE88386	3.2e-171	97.9	unnamed protein...	Macaca fascicularis
CAH91412	3.7e-171	98.5	hypothetical pr...	Pongo abelii
AAQ02332	6.2e-164	92.1	protein O-fucos...	Bos taurus
CAH03714	1.2e-162	91.0	protein-O-fucos...	Bos taurus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 19 AAWARPLSVSFLLLLLPLPGMP 40 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	19	AAWARPLSVSFLLLLLPLPGMP	40	PRIMARY	22

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 20

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: AAGGAGGTGGGAAATGATTAG
Primer_r	: AACAGGGAAAACATGATACAC
PCR product length	: 150 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3976 bp
Genome contig ID	gi51511747f_30159360
PolyA signal sequence (AATAAA,-9)	+--------+--------+----*----+---- TCAAATATAAATAAAAAATTGTGAGTAATAAAATG
Flanking genome sequence (130743 - 130792)	----+--------+--------+--------+--------+----* AACTCACAGTTTCAACAATGACCCACATTTTACCAGTCTAGTTGCATTGA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	20	f	30259360	30290101	7	100.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA0180

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information