HUGE

Gene/Protein Characteristic Table for KIAA0163

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00438
Accession No. :	D79985
Description :	Integral membrane protein DGCR2/IDD precursor.
HUGO Gene Name :	DiGeorge syndrome critical region gene 2 (DGCR2)
Clone Name :	ha01059 [Vector Info]
Flexi ORF Clone :	pF1KSDA0163
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 4436 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 2598 bp

Genome contig ID gi89161203r_17303801
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
TCATCCAAATGCCAAATAAACTTGTGTTCCGGGAG
Flanking genome sequence
(99997 - 99948)
----+----*----+----*----+----*----+----*----+----*
AGGCATGGTTAGTCCTTGGTGTGGCCCCCACGGCTGCCACAGGCTAAGGT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 22 r 17403798 17489904 11 99.2 Internal No-hit

Features of the protein sequence	Description

Length: 550 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
AAH40500	0	99.8	DiGeorge syndro...	Homo sapiens
ABM85086	0	99.8	DiGeorge syndro...	synthetic construct
CAH92561	0	98.9	hypothetical pr...	Pongo abelii
XP_530360	0	99.1	integral membra...	Pan troglodytes
XP_001489116	8.7e-210	93.1	similar to Inte...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR002172 28 66 PF00057 Low density lipoprotein-receptor

HMMSmart IPR002172 29 68 SM00192 Low density lipoprotein-receptor

IPR001304 115 266 SM00034 C-type lectin

IPR001007 271 332 SM00214 von Willebrand factor

ProfileScan IPR002172 29 67 PS50068 Low density lipoprotein-receptor

IPR001304 124 266 PS50041 C-type lectin

ScanRegExp IPR002172 44 66 PS01209 Low density lipoprotein-receptor

IPR001007 293 332 PS01208 von Willebrand factor

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002172	28	66	PF00057	Low density lipoprotein-receptor
HMMSmart	IPR002172	29	68	SM00192	Low density lipoprotein-receptor
IPR001304	115	266	SM00034	C-type lectin
IPR001007	271	332	SM00214	von Willebrand factor
ProfileScan	IPR002172	29	67	PS50068	Low density lipoprotein-receptor
IPR001304	124	266	PS50041	C-type lectin
ScanRegExp	IPR002172	44	66	PS01209	Low density lipoprotein-receptor
IPR001007	293	332	PS01208	von Willebrand factor

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 4 KADSGAFLLLFLLVLTVTEPLRP 26 PRIMARY 23

2 348 MRLVVSCISSFLILSLLLFMVH 369 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	4	KADSGAFLLLFLLVLTVTEPLRP	26	PRIMARY	23
2	348	MRLVVSCISSFLILSLLLFMVH	369	PRIMARY	22

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 22

Experimental conditions

Panel name	: Stanford G3
Primer_f	: GACTCGCTCATCTGTTCTTGC
Primer_r	: CAGTATCAAATCCCACCTCCG
PCR product length	: 205 bp
PCR conditions	: 95 °C15 sec62 °C120 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	YES

Length of 3'UTR	2598 bp
Genome contig ID	gi89161203r_17303801
PolyA signal sequence (AATAAA,-21)	+--------+--------+----*----+---- TCATCCAAATGCCAAATAAACTTGTGTTCCGGGAG
Flanking genome sequence (99997 - 99948)	----+--------+--------+--------+--------+----* AGGCATGGTTAGTCCTTGGTGTGGCCCCCACGGCTGCCACAGGCTAAGGT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	22	r	17403798	17489904	11	99.2	Internal No-hit

Gene/Protein Characteristic Table for KIAA0163

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information