HUGE

Gene/Protein Characteristic Table for KIAA0062

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00389
Accession No. :	D31887
Description :	solute carrier family 39 (zinc transporter), member 14.
HUGO Gene Name :	solute carrier family 39 (zinc transporter), member 14 (SLC39A14)
Clone Name :	ha01020 [Vector Info]
Flexi ORF Clone :	pF1KSDA0062
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 4573 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2975 bp

Genome contig ID gi51511724f_22180763
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
ATTTGTAAGATTCTATAAATAAAGCTATATTCTGT
Flanking genome sequence
(155370 - 155419)
----+----*----+----*----+----*----+----*----+----*
AATTGTTGAGAATCCCACGGGTGATCATTTGCAATAAATGTGGATGTAAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 8 f 22280763 22336131 9 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 531 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
CAH91293	0	97.9	hypothetical pr...	Pongo abelii
XP_001106660	1e-209	93.2	similar to solu...	Macaca mulatta
EAW63682	1.2e-209	100.0	solute carrier ...	Homo sapiens
BAG58625	4.7e-209	99.8	unnamed protein...	Homo sapiens
Q15043	4.7e-209	99.8	Zinc transporte...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB033091	1.3e-30	31.2	KIAA1265

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR003689 190 522 PF02535 Zinc/iron permease

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003689	190	522	PF02535	Zinc/iron permease

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 190 VEVWGYGLLCVTVISLCSLLGAS 212 PRIMARY 23

2 225 LLLYFIALAIGTLYSNALFQLIP 247 SECONDARY 23

3 262 KSAVVFGGFYLFFFTEKILKILL 284 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	190	VEVWGYGLLCVTVISLCSLLGAS	212	PRIMARY	23
2	225	LLLYFIALAIGTLYSNALFQLIP	247	SECONDARY	23
3	262	KSAVVFGGFYLFFFTEKILKILL	284	SECONDARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 8

Experimental conditions

Panel name	: Stanford G3
Primer_f	: TGTCAGGATGCTCACTTGTTC
Primer_r	: CAGTGGGGAAGAGGAGGTCAA
PCR product length	: 207 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2975 bp
Genome contig ID	gi51511724f_22180763
PolyA signal sequence (AATAAA,-18)	+--------+--------+----*----+---- ATTTGTAAGATTCTATAAATAAAGCTATATTCTGT
Flanking genome sequence (155370 - 155419)	----+--------+--------+--------+--------+----* AATTGTTGAGAATCCCACGGGTGATCATTTGCAATAAATGTGGATGTAAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	8	f	22280763	22336131	9	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0062

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information