HUGE

Gene/Protein Characteristic Table for KIAA0024

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00370
Accession No. :	D14694
Description :	Phosphatidylserine synthase 1.
HUGO Gene Name :	phosphatidylserine synthase 1 (PTDSS1)
Clone Name :	ha00556 [Vector Info]
Flexi ORF Clone :	pF1KSDA0024
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 2504 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 980 bp

Genome contig ID gi51511724f_97243343
PolyA signal sequence
(AATAAA,-26)
+----*----+----*----+----*----+----
CCTGTTTTAAATAAAAACGATTCACTTTAAAGCCT
Flanking genome sequence
(172609 - 172658)
----+----*----+----*----+----*----+----*----+----*
ATCAAAGGTCTGTCTGTAAAATGCTCATTTTCTTGCATCTTACTGGTATC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 8 f 97343343 97415950 13 99.6 Perfect prediction

Features of the protein sequence	Description

Length: 507 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_001091545	5.5e-215	99.8	phosphatidylser...	Macaca mulatta
BAF85725	8.8e-215	99.8	unnamed protein...	Homo sapiens
Q99LH2	7.1e-212	97.3	Phosphatidylser...	Mus musculus
AAH87129	7.4e-211	97.0	Phosphatidylser...	Rattus norvegicus
AAI12834	1e-210	97.7	Phosphatidylser...	Bos taurus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR004277 130 408 PF03034 Phosphatidyl serine synthase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004277	130	408	PF03034	Phosphatidyl serine synthase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1 LCRPAISLLWLVTPGVPAFS 20 SECONDARY 20

2 74 PHTITLLSFTIVSLMYFAFTRD 95 SECONDARY 22

3 103 IWRGILSVIFFFLIISVLAFPN 124 PRIMARY 22

4 135 WRMVFGLSVLYFLFLVFLLFLNF 157 PRIMARY 23

5 208 WGWAMKALLIRSYGLCWTISITW 230 SECONDARY 23

6 244 FAECWWDQVILDILLCNGGGIWL 266 SECONDARY 23

7 319 QRVAGVYLFMIIWQLTELNTFFL 341 SECONDARY 23

8 352 PLSWGRILFIGGITAPTVRQYY 373 SECONDARY 22

9 385 GTQCWVFGVIGFLEAIVCIKFGQ 407 PRIMARY 23

10 415 ILYVVLWLLCVAFTTFLCLYGMI 437 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1	LCRPAISLLWLVTPGVPAFS	20	SECONDARY	20
2	74	PHTITLLSFTIVSLMYFAFTRD	95	SECONDARY	22
3	103	IWRGILSVIFFFLIISVLAFPN	124	PRIMARY	22
4	135	WRMVFGLSVLYFLFLVFLLFLNF	157	PRIMARY	23
5	208	WGWAMKALLIRSYGLCWTISITW	230	SECONDARY	23
6	244	FAECWWDQVILDILLCNGGGIWL	266	SECONDARY	23
7	319	QRVAGVYLFMIIWQLTELNTFFL	341	SECONDARY	23
8	352	PLSWGRILFIGGITAPTVRQYY	373	SECONDARY	22
9	385	GTQCWVFGVIGFLEAIVCIKFGQ	407	PRIMARY	23
10	415	ILYVVLWLLCVAFTTFLCLYGMI	437	PRIMARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 8

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: CAATCAGGAGAGGGTAGCTG
Primer_r	: CACCATGGAAGGAGAACAAA
PCR product length	: 178 bp
PCR conditions	: 95 °C15 sec60 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	980 bp
Genome contig ID	gi51511724f_97243343
PolyA signal sequence (AATAAA,-26)	+--------+--------+----*----+---- CCTGTTTTAAATAAAAACGATTCACTTTAAAGCCT
Flanking genome sequence (172609 - 172658)	----+--------+--------+--------+--------+----* ATCAAAGGTCTGTCTGTAAAATGCTCATTTTCTTGCATCTTACTGGTATC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	8	f	97343343	97415950	13	99.6	Perfect prediction

Gene/Protein Characteristic Table for KIAA0024

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information